Gene detail

Detailed information of pspe_0.1.m1.64672.m1 in Pachyseris speciosa

Genomic Location: Sc0001272:180431...198132
NR annotation: XP_020615335.1, fibroblast growth factor receptor 2-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.64672.m1

atggcagtttcaaatggccaaattgaagTCTCCCCTCAGGTTTCTGTGTCTCCAAATGCTATAACGGTTCATGAGGACCAAGGTACCAACATTAGCTGCAATGCCACTGGTGTTCCAAAGCCAAAAATAACCTGGGAATTTGAGGGTGGAGACCTTCCTTCAGGTGTCAGTGTGAGCACTACTGAGGAAGGATCTGTTCTTCAACTGCAAAACGCAACAAAAGGAATGGAAGGGGTTTACAGGTGCACAGCAAAAAACGAAGCCGAGTCAGCAAAGTCAAATGTCACAGTTCATGTGTTAGAAAAACCCACCGCCGAAGTTGGTCCCAATCCACACCCCACATTGATGAAAGGTGATGAGCTCAAACTGACTTGCAAAGTCAGTGAATCTACGTCAGAGATCAAGTGGAAAAAAGACGATGACCCATTTGTATCAAAAGCTCTTATAACGAATGATGACCAGATGAGCACTCTTGTTATTGAAAACGTTGACACCGATGACAGCGGTGATTATTCTTGTGAGGCACGCAATGAAGCAGGTTCTGCGTCATCCAGTGTGGAGATCAGAGTGAGAGCTTCCACTGAAGGGAAGATATTTGAGTGGTATTACATTGTTGGTCCTCTGTCTGCTGTCATCTTCGCTGCACTTGTCATATGGTACATCTGCAAACGTCGCATGACAGGCAGGCAGTTTAacaCAGCCAAGGCCTTCAATCCTGGTGAAGAGCAAGGATATGAGCTGGAAGAGGTAGATCATGAAGTGGATAAATGGGAGGTTTCACGTGACCGTATAGTGCTGCGAGAGGTTATTGGCTCAGGGGCGTTTGGAGTAGTCTGGAAAGGAAGTTTAAAGGAGCCAGGTCGAGGACATGGGAGACAGGTTATCGCGGCAAAGTGCTTTACACCCACCTCTGGGGCAGAAGGAAGAAAAGCACTGATGAGGGAGATTGAACTGGGAAAAAAACTGGAAGAACAATCTCAGCCTAACATCATCACATTCATTGGATGCGTTACAACACGCATTCATCCAATCCTGATCATGGAGTACTTACCCTGTGGAGATTTGCTGGGGTATTTGAGAAAAAGCCGTGGAATTGAAGACAAGTATCATCGCGGAGAAGGTGAAGCTTTGGAGCTAGGTACATATGACCTTGTTTTATTCGCCAGACAGATTGCAACTGGGATGGTGTTCCTTGGATCGAAAGGGATCATCCACCGAGACTTGGCAGCAAGAAACATCCTACTGGACCGAAACTGTGTTTGTAAAATCACTGATTTTGGCTTGGCCTACCAAAACTTTAAGTATGGCCACGGAAATGCCAAAAAGGGTTGCATTCCAGTGAAATGGACGGCACCTGAAATACTGTACGGAAACCCTGCAGCCCTCACCAGCCAAAGTGATGTATGGTCCTACGGAATTGTTCTCTATGAGATCTTCACCATCGGGGGTATTCCATACCCGGGCTGGACAGAAGGCAAAACAATTGCAGAAATACAAAAGGGCTACCGCATGCCAAAACCCGAACACATCGACGACACCCTGTACAATGTTATGACGAAGTGCTGGCATGAAATTCCCGAATTCCGCCCCCCTTTTGAGAAACTTCGCCAAAGAATGATCCAATACGTCGAAGAGGAGTTTTACCTTGGCTTGGTGGATATGTTAAAGTACAACGGGGCCAAATATTCCAAAGTTGAAGATGAAGGAGCACAGGCTGGTGTAAAAGACGAACCAGTCGAGAATGAACCAaagaagaaagtgtcaactaaAAGGAAGTGGCAAAGTGTTCGCAATTAAAGCGTTTAAATCACTTTCAGGGGCCAAAAGAATAGTTCATAATTGTGGAGGAGGTCGAAAAGTAAATAATTGAGATTGATTTAAGGTACTAAACCGAATTGATAAGTCAGGCAAGGCTTCCTGTAGCTGGTAGCAGTTGAAAATGCACAAAAATTCCAAACCTAAAACTATTTTATAAGCTAACAAAGCCCAAAAGTGTTGTTTGCAATTGGTTTTCCGAGAAATCAATACATTGTGCTTAAAGACTTCGAAGCTTAAAGATAAGAGGCAAAGCGGCCTACAGCTGTTCGCAGTAGAAAATTTGCAAACTTTCGAAAGTAGAGCAATTGTATAACGGACAAAGAGTTGTTTGTAAGTCGTTCGGAGTTATTTAATATGTCGGATCATTAGCAAGTCATGATAGGGGCGTAACAAGCCTCATGTAaaaccgagggtaaataaagttcattcttCATTCATTCAGCAATAGATCTAGACTATGGTTAAATGTATTGGAGCTTATAGCGAAACGAGATAAAGGCGCCTTCAGCTATTAGCATTAAAAAATGGGTAAACTCACAAGGTCCAAATGAGTCGTTCCTAATTCGTTCGCACATGGATCAATAGATTAAGGTTAAATGTATTGGAGATTATAGATAAGCGAGGCAAAGCTACCTGTAGTTGCTTCAAACAAAAACCGGACAAATATATATTTGCAGATAGAAAAATGTTATAACCTGCAAGGTCCAAAAGAGTTGTTCGTATACATTAAGGTTCGATGTATTGGAGCTTATAGATAAGCGAGGCAAAGCCGCTTGTACATGTTAACAGTAGAAATGGAAAAACTCACCAGGCCCCAAAGTGTTGTTTGTAATTCCTCTGTGGTAGATAAATATATTACGGTGAAAGGTATTTAGGCCAATGGGTAGGTCACGCAGAACCGCCCGAATGTACTGTTACTATAGCAGGTTCTCATTAATTTGCGGTGGTATAAGTATACGCATGGTTACGTCATAGGCTACTGTGTTTATCCAAAGAATAAAATCTAGGGGATTCCCATTGACAGGGTGACGTCATAGCATATGTTTCCCATTAGAGATCATGGTTGGTGTAACAGTTTCACAGCTTTGTTTATGTGACAAACGTTACTTATatttaaattataaaaattggtTAGTTCATTTTGCCGTCTGTTGTTTGAACTGTGTCCTCCAATAGCTTCTTCGTTTCAGTGTTGTTATCCCTAAAGATTATCTTACGCCCGTTCAAATAAACGTCACCGCCTGCGCTATTTGTGTACCGCTGAAACACTTGATAGACCTTGTGATACAATTTCT

Protein

Uniprot

Uniprot term	Description
Q5MD89	Vascular endothelial growth factor receptor 3 OS=Danio rerio OX=7955 GN=flt4 PE=2 SV=1
Q9I8X3	Fibroblast growth factor receptor 3 OS=Danio rerio OX=7955 GN=fgfr3 PE=2 SV=1
Q9VBW3	Tyrosine kinase receptor Cad96Ca OS=Drosophila melanogaster OX=7227 GN=Cad96Ca PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR020635	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR050122	Family	Receptor Tyrosine Kinase	Interproscan
IPR008266	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24416	TYROSINE-PROTEIN KINASE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0004713	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0004714	Molecular Function	transmembrane receptor protein tyrosine kinase activity	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0007169	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0033674	Biological Process	positive regulation of kinase activity	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan