Gene detail

Detailed information of pspe_0.1.m1.65202.m1 in Pachyseris speciosa

Genomic Location: Sc0001311:102505...131798
NR annotation: XP_020608898.1, CCR4-NOT transcription complex subunit 4-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.65202.m1

atcacaatcAAAAGATCATTTTatggaaaagaataaaaatcgaaaatgttaTACCGTACACGTGTCCCTTGTGCATGGAACAGTTGGAAATCGATGATGTCAATTTCTTCCCCTGTACTTGTGGATACCAGATTTGTAGATTTTGCTGGCATCGCATTAGGACTGATGAAAATGGATTGTGTCCTGCATGTAGAAagCCATACAGTGAGGATCCTGCAGTTTATACACCACTTTCACAAGACGAAATACAAAGAATTTTAAAGGAGAGAAAGCAAAAGGATGTACAAAGAAAACAGAAAGTTACCGAAAACAGAAAACACTTGGCAAATGTGAGAGTCGTACAGAAAAACTTGGTGTTTGTAGTTGGTTTAACCCAGAGATTAGCGGACCCTGAGCTTCTGAAGAGACCTGAGTACTTTAGCAAGTTTGGCAAAATACACAAGATAGTGGTGAATAATAGCACTAACTATGCAGGGCCCCAGGGCCCAAGCGCAAGTGCGTACATTACATATGTTAAAGAGGAGGATGCCATTAAAGCCATCATAGCAGTGTGTAATACTCATCTGGATGGGAGAACACTCAAGGCATCTTTAGgaacaacaaaatattgtagTTACTTTCTCAGAAACATTCCTTGTCCAAAAACAGATTGTATGTATCTCCATGAGTTAGGTGATGGTGCAGGAAGCTTTACAAAAGATGACATGCAAGCTGGGAAACATCAAGAATATGAACAACAGTTAATTGCTTTTTATTCAAAGAAAATgGCTGGCAAAAATGAGGATGGTGATGACACAAATCGACCTGTCACAGAGAGTGATGATAATTTAATTCCACAATGTAAAGAGGACTGGGAGGAGTCATGGACACCTCCCATCTCAGCACCTGATCACATCCCACCTGCTACCATAATACAAGAACCATCGACAAACCCTACACAGTCAGTACACACAAACACAGGCTGGGGAAATACAGGAAATACTTCAAGTGTTTTAGATACTTCTAGTCTGTTCTCAGCTGATCTCTGTAGTGGTTTGGGACTGGCTAATTTACACTTGAAAGTTTATGGAGAGGACGATTTAGGGTTTGACCCATGGAACGAATGTAGTAAAGGTTTAGCAGATCTCCTTAAAGAGGAAGAACAAACCACCAAACCTGGCACAACACAACATATCTCCACAGCTGCACATGCGCCCAGCTTCCTTCCATCATTTCCAAGAGATCCTGATAACATTAGAAATTGGCAAGATGGACTCAGAGCACTTTTACCGAATATTAACATCAGCTTTTCAGTTCGCCCTCCGCCTGGATTCGAGTGTAAACAGCTGGCAAGTCAGATGTCAACCATTGAAGATCCAAGTATATTGTGGTCAAAAACACTAGATCAAGGTAACCCGCAAATGAACAAACCCATCACAAGACCCGTTCCAAATGGATTTCCTGGAATGCATCCCTTAACAAGACCAGCTGATCTACAGCGCTCCGCGGCAGTCTCATCAAGGGACTGGGTAAATGCACAATTAAGTGATGAGCCCTCGCGAAAACGCAACTCCAACACAAACGTTGACCCATGCGGATTTGACGAAAACGGAGTCAGTGGAGTACTAACGAGTGAAAAGCCTTTaacaaaaaatctaaagagCGCGCGAATGGAAGAAACTCATTGGGTAAATACCAAGTCATCTGCGACACAAAATTCTCTTCAACAGCGCAAGACAAGAGTCAGTGAATTATCTATTATTGATGTGAATGATCCACTTCCAACGAAGCGTGTTCACTCGTCTTTAGACTATAACCTGGAAAACGAAAACATGGTTACCAAAGTACAGGAGACTAGGACGCAACGAGGACAAGTCCAAGAAAATCGTGGTCGATTCATGCGGCAGCAACAAGAGGAATATTCAAGTATTGAGAAGAAATTACGACGCAGCAGACATGATAACAAAATAAACCCAAGGTGGTCTTGACTTAGATAACTGTCACGAGAAGGAAGAGCAGAATATTCGGGTGGTGTCACAAGACCCTAAGTGGAATAGCATGGGAGTCAACCACTCGTCAGTATTTTGGGCAGGGGTGGAGGGAATTCCCTATGCCACGTTGATGAAATCACCAACGTAGCGTGGGTTTGCAGATGTATTGACATTCTCTATAGAAAAGGTCTTTGAAATCCAAACAACATTTAGCAAGAAGTACTTGACTAGTAATTCAAGTGATCACGTTTAAGCTGTTGTGTGACGGGCTGGTTGCAATAATGGACTACTTCGACGATGTCACGCAACACAACAATTTTTcatataaacaaaaaacaaacctCCAAGCAAGCGCTTGCCCCCTGGCATAAATTCCTGgtaaaaactggcaagtttggGGGCTCGTATTTCCACAAGTTTGAgacggattcttatgaaacctcgcATATTTACTAAATTTGGCATGGTGAATCGATCTATggaggttgttttttgtttatgtGAAAATCAGAAAAATTGCTATTTTGCGTGACATCGTGGAAGTGGTGCATTGTCAACTCATGAATCATCTCATGATTTAGAGGAAACTGTTGTCTGTTTTGAGTGGTGCTTCATTTATCTACGAAGGCTTGAGGTTTGTCCCAAATACTCACGCCTATGACCCGCAAACGGGTGCAACACTGTTAACATTTCCGCTCCCCTTCTAGAACGACATAAACATACTGTCAACGTTGTGTACGAtgaccaacctcgttcccaaaccctgggaacgagattgtacGATGACTACGCAATGGATCTCACAACAGATCACGACAATAGACTTGTTACCTGAAGCATCACCATCGCGTTTTACAAACTGAGGTTATTAGATATGCCACTACAATAATCATTGATCAGCTTGCTGTACTAGCAAAAAAGGATAGAGTTTTGTGGAGGGACTATACGCTGATAGCTTCTAAgtgaaaatttgatcatttcaacCGAGGAACAGAACCTTTGATGGTTAAGTTGTCAAATTTCCTCGGGGTAATCTTCAAACTGAAAGACAGAAACCCTCTAATGTTTGTTATTCTTCACCATCAAAGTTTCGCCTTAACAAGTTACTTAccatatacatgtaataatgCTCTTTTTCGTGATGATATGACATTGACTCCCGGCCATTCTTTGATCTGTTGGAAATATTGACTAAACATGGTTGTGTGGATACCCATAGGAGGTGACTGTCGTACTTACAGGACTTAAAGTGTGAGGAACATTGTAAATGAAACAgttcagggcccggttgttcgaaagctgattaactttatccaggattagcgtaaactttggttgcagttttcaaCTTTCTGATGAAAGTTGTTGACACTGCTTGTCCGGCAGAAAGAGCTGTTAAAACAGGTTTTGTAGTATCACGTCAGACACCGGTGTCTCGCCTCTTGATGCTTATGACTGCTACTTTCCTTGATAATGCTGTCCGTTAATGATCAAACATGTCGTGTTCTAGTCTCCTGTTATAGTAAACTataaaaaagcaataaataatCACTGGTCTACTTAACATTGTTTACCCCACTGACGCTGTCTCTATAGCTGAACCTTTCTCTCTTAAAATAAACGGAGGGAGACGCAAAGGTTCTCG

Protein

Uniprot

Uniprot term	Description
O95628	CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3
Q8BT14	CCR4-NOT transcription complex subunit 4 OS=Mus musculus OX=10090 GN=Cnot4 PE=1 SV=2
Q09818	Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16C9.04c PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF14570	zf-RING_4	RING/Ubox like zinc-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR039515	Domain	NOT4, modified RING finger, HC subclass (C4C4-type)	Interproscan
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR034261	Domain	CNOT4, RNA recognition motif	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR039780	Family	CCR4-NOT transcription complex subunit 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12603	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0030014	Cellular Component	CCR4-NOT complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10643	CNOT4, NOT4, MOT2; CCR4-NOT transcription complex subunit 4	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala