Gene detail

Detailed information of pspe_0.1.m1.65802.m1 in Pachyseris speciosa

Genomic Location: Sc0001358:132000...146442
NR annotation: KAJ7382240.1, Cytoplasmic polyadenylation element-binding protein 1 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.65802.m1

GGCCAAAAGACAATTGTAATAATGTATTGACCAATGAGAGGGCTTTGCACGAGAATCCACAGATTCCACGTGCGTTTGTCCAAGCCGAAATGATACAAATAGTGCAGAACGATTGCCGGATGATGAAGTGTTTAGCAAGTCCACAACACTTTCACTTTCAAACATGAGCAAGGAGAATACTGGAGAAGAGAAGACTTCAATCTTAACGCGACTCAATGCACTGCTGGATTCAGCTCTGGACCCCAACTCGGCTGGGAAGAGTTTATTTCCCCCACAGCCCGTTTCACAGCCGTGTTGTGGTTCCTTTATCGGCTATCCAGGATTTCAGCCTACTCCACCAGACTCAAGATCACCAAGCCCCTTGCACATGGATGAAAGAGTCGGCGAACTCTTCATGGGTAATTTTATGGCTGGTGGTGCTCCGTTTGGAATGCATACCCCGCCGGACAGTCTTCCCTCTTCTCCTACTGGTGCATTTTCCCCCTTTGGAACAATCCCGTTCTCTCCTGTTTCCCCTGTGGACTCTGAATCAAGCCTTAGTCCTATGAGACCTTCATATCGTACGTCCCTCCTTCCCCGGTGCCAGACAAGGCAGCTTGGGATGCCACCAACAACTCTACCAGCTGCTGAGATGGCATCTTTTGGCAGCTTGTTTGCTGACCCTCGCTGGACTGGCATTAATCCCTTGTTTGGAATGTGGAATGAACCAACAGGATATGAATACATGCAACAACAAGGCCTAGCACAGCTGTTATCAGGGACAGACTACAATAAAGGGAATATGAAGAAGTGGTCTGGACAACTACCACGTCGGAACTACAAGAATCCAAGTTACTCCACCAAGGTGTTCCTTGGAGGTGTTCCTTGGGATATTACAGAAGGATATGTGTACCTGATCTTTGATTCTGAGAAGTCAGTCAAAGCCTTGTTGGCCTCCTGTACTCATGACTTTTGTAATGGTGGAGACTGGTACTTTAAGATCTCCAGTAGACGTATGAGATGCAAGGAGGTTCAAGTAATCCCATGGGTATTGTCTGATACCAACTATGTTCGTGGACCTCATCAGAGGTTGGACACCAGTTGGACTGTGTTTGTTGGTGGATTACATGGCATGCTAAATGCAGAGGGCCTGGCCTACATTATGAACGAGCTGTTTGGTGGAGTTGTCTATGCTGGTATTGACACAGACAAACATCGCTATCCAATAGgTTCTGGTCGCATTACATTCAACAACCAGAAGAGCTTTCTGGAAGCTGTGCGATCAGGATTCATAGAAATTGAGACTCCAAAGTTTGTTAAAAAGGTGCAAGTGGACCCGTATTTAGAGGACTCCATGTGCGACATTTGCCGCACAACCTCAGGTCCTTTCTTTTGTCGTGAGGAATCATGTTTCAAATATTATTGTCACTCGTGTTGGTTGTGGCATCACTCAATTGAAGGATATCGTCACCACAGACCACTGACTCGCACAAGTAAGAGTGGCAATACTTAGAGAAGTACAACCCTTACTTCAGACAGGAACATAATGGCATTGATCACCATGGCTCTATTTGGTGCTAAgttatttgtttggttgttttgtgTGCATTGACCTGAAAACATTGGGTCATTTGAATTGCATTTGAATGTTACCATATTTGaactttttttcaaaagtgttCAGATTTTTCATAGGACCTGCAATCTTTTGATCTAGGTCAAAATGTCATTTTGCGCCTTTTGTACTGATGAGCTGGTTGTTGCACCGTACTTTCATAGCTAACACAGTACATTTAAGTTGTGATCAGCACACTGTATATTACTGTACACTTCAAGTACTGTGCATTTTTCTTTGCCCTCCCTTCACCTTGGAAAAATTTGGCATTTTATCTTCTTAACCAGTCAGTGCAAAGCCTGTCGTTTACAAAGATCAACAGTGCTCTGAATACCTAGCAACCAGCTCAGATCAACAAGTTATTTATAATATAATGCTGACTTTGTATGTAGTTGGtttgaattttttaattttgcttgcATCCACCATCACTGCTTGTGATTTTAGTGTATTGTGCATGTTTAGGTGTTTATCTTGATTAATTCCTCTACCATAGCAGCTGATTCGTATTgaattattttacttttctatcgagtttttttcttaaatcaTGATGGATTTTTTTGATGTTTACAGTGTTTATAATGCAGTCCCAATATTTGAGAACTGTACATCTTTTGTCTGTTCTGCAGAAGATGCATACAAAAAGTTAAGTTTGTTCAACTTTAGTATTGTTTGCTCCTTGAAGGCTGGGCCTCAGATTGTAAGGAgcaaattcttttaattttgaatatTTTGTCCTCCAACATAAGAAGTCCTTTTTAAAGATCAGTTTTCTGGCAGGTGTGCAGTTACCATTTACCCTTGGTCATCAAGAATACCCAGCTAGACATCAACAATTATTCATTTTGACAATATACATGCAAGTAAATAAACAATGGCAGATGAATGCTGCTGAGCAGTTCATTTGATCATTCACTCTTGGATTTACTCCCTTGGAAATAAGCTGTATACTGGACATTTGCTGATTTAAGGGTAACTCATCTTGGGGCCAATGGGTTTGAGACTTCTTCTTGAATTTCCTACAGTAGGTGTTaccttttttgtttgcttttttaaaCTACTAATGGTCGAACTTTCTGGGCACCATAACTTGCACAAAATATACCGTATGTATATACCATTAGGCTTCTTGagtgttttgtaatttttcaagtttttcaaattcaagcagTAGTTGCTACGTGCTATGGCTTCTTTTAATAGTAATTGTAAGAGTGAAAAATGCTGTTTTTATATATGGTAAGTTAACTTTATTAGTATTGCAGTGCACCTAACAACGTTCAGATACCAGTAAGTTATTTTGGTTGCACTCATGTCAAAATGCTTGTTGTTGAGTATGGAGTGAGAAAATCGTTTTTAACCTactagaaaagaaaaagtaaaaataTATTAAGAAAGATTGCTACATATTTATTTTGTAgttgttaataaaaaaaaataggcaagattctattgttggcaaTAACAAAGACTAGCTATTTATAATGTTTACTTCAATATTTTTGTAACGAATTTAAGTTATTTTTTGGCATGTTCCTGTTAACATGCTCTTAAACTGTGCGAGAGCGATGTGGTCATTTGCCTGTTAAGCAAAATGATTTATATGCGTTAAGCAAGTTTCATTGGTTGGACTGTAAAAATCTCAACCAGGTTGGTTTTGTCAGA

Protein

Uniprot

Uniprot term	Description
Q5R733	Cytoplasmic polyadenylation element-binding protein 1 OS=Pongo abelii OX=9601 GN=CPEB1 PE=2 SV=1
Q52KN7	Cytoplasmic polyadenylation element-binding protein 1-B OS=Xenopus laevis OX=8355 GN=cpeb1-b PE=2 SV=1
Q91572	Cytoplasmic polyadenylation element-binding protein 1-A OS=Xenopus laevis OX=8355 GN=cpeb1-a PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16367	RRM_7	RNA recognition motif	Domain	Interproscan
PF16366	CEBP_ZZ	Cytoplasmic polyadenylation element-binding protein ZZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038446	Homologous_superfamily	CEBP, ZZ domain superfamily	Interproscan
IPR034819	Family	Cytoplasmic polyadenylation element-binding protein	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR032296	Domain	Cytoplasmic polyadenylation element-binding protein, ZZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12566	CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000900	Molecular Function	mRNA regulatory element binding translation repressor activity	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006417	Biological Process	regulation of translation	Interproscan
GO:0008135	Molecular Function	translation factor activity, RNA binding	Interproscan
GO:0043005	Cellular Component	neuron projection	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0045182	Molecular Function	translation regulator activity	Interproscan
GO:0045202	Cellular Component	synapse	Interproscan
GO:1990124	Cellular Component	obsolete messenger ribonucleoprotein complex	Interproscan
GO:2000766	Biological Process	negative regulation of cytoplasmic translation	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02602	CPEB, ORB; cytoplasmic polyadenylation element-binding protein	-	Messenger RNA biogenesis	ko03019	deepkoala