Gene detail

Detailed information of pspe_0.1.m1.66007.m1 in Pachyseris speciosa

Genomic Location: Sc0001376:77554...103313
NR annotation: CAH3194595.1, unnamed protein product, partial [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.66007.m1

ATGCTGGTCTTAAAAGAGATGCCGCAAGTCTTTGTTTATTTTGCAAACTCTCAGAGCCCGCCTCCTGATTTTAACAACGCATTCTGCAAGGATATCAACTTTATAAAGGTGTATAGAAATGCCCCGAGCGTTTTTGTATCAGCGAATCACTCCTCGAACGGTGGAAATCAAGACCCCATGCACAATTCCATAACAGCTTGGGTAGAGTACATCAACACGACTGGAGCCCGAGTTTGTTTAAAGGAATTATACGAGTCAAAGTATGACCCACTCTCAATATCATACTTTGTCATATCGGATATATGCCAACCAGAATGGAGTTACTTTGGAGGTTATTGCTACTTCACCAGCCCCCCGTGCGCCTCATGGTTGACTGCTGTATCAAACTGTTCCACAGTGAGCTCAAATCTGGTAACGGTTCACAACCAAGAGGAAAATGTTTACATCCAGCATCGCAATAATGGTGAAAGAAGCTGGATTGGTCTCAATGACAGAAGTGTGGAAGGATCGTTTGCGCCAAGACAACCAAACAACAGGAAAGAGGAAGACTGTGTGCATACTCTCGGTGTTAAGCATGGGTACACTTGGAATGATGTCTCCTGTAACAGCTGCTTCAACTTCACTTGTTATGCAGACATAGACGAATGTTCTACCAACTCACACAATTGTGATATAAATGCCGTGTGCAATAATACCCAAGGATCCTACACTTGTTCGTGCAGTGTTGGATATTCGGGCAACGGAGAGAAATGTTCTGAAATAGACGAGTGTTCTACCAATTCACACGGCTGCGATGTAAATGCCGTGTGCAATAATAGCCAAGGATCCTACACTTGCACATGCAATGTTGGATATTCAGGCGATGGTAGAACATGTACTGAAATAGACGAGTGTTCAGCCAACTCAAACAGCTGCGATGCAAATGCCGTGTGCAATAATACACAAGGATCCTACACTTGTGCATGCAGTTTTGGATATTCAGGGGATGGGAGGACATGTACTGACGAGTGTTCATCCAGCGCCCACGGATGCGACATGAATGCTATATGTACCAACACCGGAGGATCCTATAACTGCACATGTAATGCTGGATACGGAGGAAACGGAACATTTTGTGCATCTTTCACCGCCACTTTTACAAACCTCGGTTCCAGTGGGAGACTGGGGCCAACATCACTTGGGAGTCACTACAGTGGTCAGGATCATGACGGTAACTACAGAATCGAAGCAATTGGAGCTGCAGGAGGGTACGATATATACAGTACCAGTGGTCAGTACCAGGGAAGAGGCGCTAGAATGATAGGAACCTTTCGCTTATCAAAAGGAGAAACAATAAAGATTCTCGTTGGACAAGAAGGTGGGATTAACACAGTAAGTCAAAGTTCTGGGGGCGGCGGAGGATCCTTTGTAGTGATAGGAAGCAACACACCATTGATAATagctgggggagggggaggaatCGAAACAGCTCAGTCAAGACATGCAGGATGCGATGCTTCCACAGGAACATCAGGGAGAGCTGGGTACAGGTCATGGCCAGGTGGAAGCGGTGGACACGGTGCTCAGACCGCTGACAATGGTAACTCAGgtggtggcggtggtggctTTCTCTCAAATGGAAGAAGCTCTACGCAGTTTGGTGGTACCATGGGGAATGGCGGAGAGGGAGGCCAAGGATTTATTCAAGGAGGAGTGGGTGGAAGAGCCTGGTATCACAGTGCTGTTGGAGGATTTGGAGGAGGTGGGGGAGCTTATGGAGCTGGGGGTGGTGCTGGAGGTGGAGGAGGTTACTCTGGAGGGAGTAGCGGAAATAATGAAAATGACTCCTGTGGAGGGGGAGGAGGATCCTACAATGATGGAAAAAGTCAACGGAATGAATGTTGTTACAATGCAGCTGGACATGGTCAGAGTCCAAAGCTGgcaaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaacaaAATGAGTTTTCAAACAAAGGCAAGTCTAGTG

Transcript

pspe_0.1.m1.66007.m1

GATCACTTTTCAAGAAACCCTTCAGTTTTCATTACGGCGGCACACCAACATGCTGGTCTTAAAAGAGATGCCGCAAGTCTTTGTTTATTTTGCAAACTCTCAGAGCCCGCCTCCTGATTTTAACAACGCATTCTGCAAGGATATCAACTTTATAAAGGTGTATAGAAATGCCCCGAGCGTTTTTGTATCAGCGAATCACTCCTCGAACGGTGGAAATCAAGACCCCATGCACAATTCCATAACAGCTTGGGTAGAGTACATCAACACGACTGGAGCCCGAGTTTGTTTAAAGGAATTATACGAGTCAAAGTATGACCCACTCTCAATATCATACTTTGTCATATCGGATATATGCCAACCAGAATGGAGTTACTTTGGAGGTTATTGCTACTTCACCAGCCCCCCGTGCGCCTCATGGTTGACTGCTGTATCAAACTGTTCCACAGTGAGCTCAAATCTGGTAACGGTTCACAACCAAGAGGAAAATGTTTACATCCAGCATCGCAATAATGGTGAAAGAAGCTGGATTGGTCTCAATGACAGAAGTGTGGAAGGATCGTTTGCGCCAAGACAACCAAACAACAGGAAAGAGGAAGACTGTGTGCATACTCTCGGTGTTAAGCATGGGTACACTTGGAATGATGTCTCCTGTAACAGCTGCTTCAACTTCACTTGTTATGCAGACATAGACGAATGTTCTACCAACTCACACAATTGTGATATAAATGCCGTGTGCAATAATACCCAAGGATCCTACACTTGTTCGTGCAGTGTTGGATATTCGGGCAACGGAGAGAAATGTTCTGAAATAGACGAGTGTTCTACCAATTCACACGGCTGCGATGTAAATGCCGTGTGCAATAATAGCCAAGGATCCTACACTTGCACATGCAATGTTGGATATTCAGGCGATGGTAGAACATGTACTGAAATAGACGAGTGTTCAGCCAACTCAAACAGCTGCGATGCAAATGCCGTGTGCAATAATACACAAGGATCCTACACTTGTGCATGCAGTTTTGGATATTCAGGGGATGGGAGGACATGTACTGACGAGTGTTCATCCAGCGCCCACGGATGCGACATGAATGCTATATGTACCAACACCGGAGGATCCTATAACTGCACATGTAATGCTGGATACGGAGGAAACGGAACATTTTGTGCATCTTTCACCGCCACTTTTACAAACCTCGGTTCCAGTGGGAGACTGGGGCCAACATCACTTGGGAGTCACTACAGTGGTCAGGATCATGACGGTAACTACAGAATCGAAGCAATTGGAGCTGCAGGAGGGTACGATATATACAGTACCAGTGGTCAGTACCAGGGAAGAGGCGCTAGAATGATAGGAACCTTTCGCTTATCAAAAGGAGAAACAATAAAGATTCTCGTTGGACAAGAAGGTGGGATTAACACAGTAAGTCAAAGTTCTGGGGGCGGCGGAGGATCCTTTGTAGTGATAGGAAGCAACACACCATTGATAATagctgggggagggggaggaatCGAAACAGCTCAGTCAAGACATGCAGGATGCGATGCTTCCACAGGAACATCAGGGAGAGCTGGGTACAGGTCATGGCCAGGTGGAAGCGGTGGACACGGTGCTCAGACCGCTGACAATGGTAACTCAGgtggtggcggtggtggctTTCTCTCAAATGGAAGAAGCTCTACGCAGTTTGGTGGTACCATGGGGAATGGCGGAGAGGGAGGCCAAGGATTTATTCAAGGAGGAGTGGGTGGAAGAGCCTGGTATCACAGTGCTGTTGGAGGATTTGGAGGAGGTGGGGGAGCTTATGGAGCTGGGGGTGGTGCTGGAGGTGGAGGAGGTTACTCTGGAGGGAGTAGCGGAAATAATGAAAATGACTCCTGTGGAGGGGGAGGAGGATCCTACAATGATGGAAAAAGTCAACGGAATGAATGTTGTTACAATGCAGCTGGACATGGTCAGAGTCCAAAGCTGgcaaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaacaaAATGAGTTTTCAAACAAAGGCAAGTCTAGTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12947	EGF_3	EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR037221	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR018378	Conserved_site	C-type lectin, conserved site	Interproscan
IPR024731	Domain	EGF domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24039	FIBRILLIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04591	ADGRE1, EMR1; adhesion G protein-coupled receptor E1	-	G protein-coupled receptors	ko04030	deepkoala