Gene detail

Detailed information of pspe_0.1.m1.66510.m1 in Pachyseris speciosa

Genomic Location: Sc0001420:98729...100780
NR annotation: CAH3038486.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.66510.m1

ATGGATGTTAAGACCATGCTAGATAATCTACATGACCAAGTGTCTTGTTCTGTGTGCATGTGCACATTTACCGAGCCAAAACAGTTGCCGTGCTTGCACAGTTTCTGTCTTCACTGTTTGAACGGGATTCATCGAACAAGTCCAAATCGTGGAGTGATATCTTGTCCAGAATGTCGCAAGCAAATCAGAATCCCAGGCAGTGGAAATCCCAGCGAGTTTCCAACCAACTTCCGTATAAACAGCATCCTAGATGTGTTGGCCATTAAAAAGTGCAACACAGCTGGCGTGAAATGTGGCAATTGTGACAAAAGAAGTACGAACTGTTTTTACTGCTTCCCGTGTTGTTCGTTCTGGTGTGAAGACTGCATCACGGCACATAACATAATACGAAGTAATAAAGATCATCGTGTGCTGGCGATAACAGACTTTCAAGATCAAGACATCGAGGAAGTGTTAAAGCGACCAGCGTTTTGCCACAAGAAACACCACGAGAAGGAAGAGCTCAAGTTCTTCTGCAAAGTATGCAAAGCCGCCATTTGCAACGCTTGTGCTTTAACAGATCACGAAGGTCATACTAAGATACTTATGGAATCGGCTGCGCACGAACGCAAGCTTCACTTTAAATCTGTTATCACATCGCTGAAGGAAAAAGCACAGGAAGAGAGAAGTGGAGTCGGCAGACTCAAGCAAAGCAACGTTGATGTTCAGAAGAAATTAGCTGATGTGAAGAGCAAAGTACAAGCGACCGCAGATCAGATTATCGCTCTCATTGAAGCAAGAAAACAGGACATTTTCAACGCTGTTGATAATCAAGCCACAGAGATCCTCAATTGTCTCGCGTTGAAAGAAAACGAATCCAAGGAGAAGCTCAAATTGATTGAATCAACAATCGAGAAAACCGAAAATCTTCTGAAACGCAGCTCCAACGCTGAAATCCTAGCGTTTAATATTGATGAAACATTTGGCAGAATCCTTGAGGACCAAGGAGTTCAAGGTACAAGTGACTCTGTACGAATTCCTTATTggaattttaatgaaaataagAAAGTTGTTAGCATGTTAAACACTGAGGGAATAGGTTCTGTAAAAGCCGTTTTCAGCACAGCTAAAGGGCAGCAGCCAAGCGgcataagaaaagaaaatagtaaagCTGTTGCTGGGTTTGAAGGAAAACATGTTCGGGGTAGTGCTGTTAAGGTTCAGATGCAAACCAGGCAGTTCACACATGTGCTGTCTTTTGGGCAAAGAGGTGAGTCTGTTGGAATGCTTAGGAATCCATGTGGGGTGGCAGTGAATGATGGAAATGAAATAGCAGTAACTGAGTGGCTTAACCACAGGGTATCAGTATTCAGTAGTGACGGTACCCACCTAAGATCGTTTGGTAGATGGGGTGTGAGTGAGGGTGAATTTCAGTGCCCTTCAGGAATAGCTTTTGACACGAATGGCAACATTATAGTGGTGGACTGTAATAACAACCGTATACAAATGTTTACCAGGAATGGTGAGTTTCTTAGTAAGTTTGGTGATCAAGGTAGTCATGATCATCAGCTTAAGAATCCTGAGGGTTTATCTGTCACCACTACTGGTGATATTATTGTTGCTGATTATAGTAATCAATTTATTAAGTTATTTTCACCTCGTGGCCAGTTTGTATGTAAAATTGGCGGTGAGGGCTCTTTGGAGTGTCCTTATCACTGTATCCAGACGGAGCAATATCTTATTGTCTCAGACCCGGGTGATGACTGTATCAAAGTGTTCGATTGGGAGGGTAATTTTCTGTTTAAATTCGGAAAGCAGGGAGACAAGGATGGTGAGTTCAGTTCTCCTGGTTACTTGTCAGTTAACAAGGATGGACACCTGATGGTGTGTGATTCAGGGAATAACCGAGTTCAGGTGTTCGAAATGAACGGGAATTTTGTGACAAAGTTTGGTAGAGCAGGCAGCGGGAGAGGAGAGTTTTGGTATCCAATGTCTACAGCAAATCTTAGTGATGGAAGGATAGTTGTGTGTGACACTAATAACCACCGAGTACAGATATTTGAGTTGGTATGA

Transcript

pspe_0.1.m1.66510.m1

Protein

Uniprot

Uniprot term	Description
Q56R14	E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis OX=8355 GN=trim33 PE=1 SV=1
Q5ZMD4	Tripartite motif-containing protein 59 OS=Gallus gallus OX=9031 GN=TRIM59 PE=2 SV=1
Q9QUS6	Probable E3 ubiquitin-protein ligase MID2 OS=Mus musculus OX=10090 GN=Mid2 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan