Gene detail

Detailed information of pspe_0.1.m1.66591.m1 in Pachyseris speciosa

Genomic Location: Sc0001428:160649...166459
NR annotation: XP_015780521.1, PREDICTED: LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 4-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P35951	Low-density lipoprotein receptor OS=Mus musculus OX=10090 GN=Ldlr PE=1 SV=2
C0HL13	Low-density lipoprotein receptor-related protein 2 OS=Sus scrofa OX=9823 GN=LRP2 PE=1 SV=1
P20063	Low-density lipoprotein receptor (Fragment) OS=Oryctolagus cuniculus OX=9986 GN=LDLR PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan