Gene detail

Detailed information of pspe_0.1.m1.66652.m1 in Pachyseris speciosa

Genomic Location: Sc0001434:50161...77659
NR annotation: KAJ7369899.1, TNF receptor-associated factor BIRC3 binding domain [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.66652.m1

GGGTGTGACGCAAGTGCTAAGAGCATGCTGGGAACCACTGTCGCACAACAAATGTTGTAGTTCTCGGATTATCGATACGGAAATTATTTCACTACACCACGTATATAAGCTTACGCTACTTTAGAAGTGCTGCAAAGCAGTCAGAGTGTGTAATGTCTATCCCTGGTGGATATAGAGTTCCTGCTTCAGATTTTGAACACATAGACAAACACTTCCTCTGTTCATCCTGTGGTTTTGTTATGAGAATGGCCATGCAGACAGGGTGTGGGCACTTGTATTGCACAGCATGCCTGGACAACATTGAAAGGCACCAGAATCCAACCTGCAGTGGAAATGTCGGGGGAAAATTATGTGGTCAATCTTTGGAGCAAATGCAGATGTTTCCTGACGTTTATATTAGGAGGGAGATCAATAATATCAAAGTGCATTGCATAAATGTGGCTGCTGGATGTGATTGGAACCATGATCTAAAATCCTATGATGATCATCAGAATGAGTGTCCATGGAGACCTGTGTGCTGTGGCAATGATGGCTGCATGAGAGAGGTAGCAGTCTGCAAGCTAGCCTTCCACGAGAAGGAAGAATGTAGCTGCCGTAAAGTAACATGTCGGTACTGTAACTCTGTGGAGACAATCGGAAATCTCCAGAATCATCTTGAAAATTGTCAAGATTTTCCTCTTAGCTGTCCCAATTGTGGTGTCGACAACATACCTCGTAGCCAGCTAACTCTTCATAATGATCCATTTAATGGCAGTTGTACACGAAATAGTTGTCCTTTCAGAGAATTTGGTTGTACCTGCGAGGAGTTGATGAGTCGTGAAGATCTGGCCTCGCATCTGAGAGAAAATGTGAGCGAGCATCTTATTGTTGTCATGGCGCGTGTGGAAGGGAATTCTCTTCAAAATCGTAATACAGAAGGTATCACTCAAGGCCTCTGTGAAGCTCAAGCAACTATTGCGTCTCACAGCTGGGCCTTATCAAATCACAATTGGCGGATGGAAGATATTAGTGGTGAAGTAAAAACCTTGGTTAACGCCTTGGCGGGTGTGGAAGAAGGCTTTGAACAAACACAGCTGGCGCAGACGCAAGAGATTGCGGCGTTGAAGAATGACGTCGAAAGATTGAATGCCTCAGTTGTTCAGCAAAGGCAACAGATCGACGCCTTGTACCAGATGGTAAGAGGAGTGGTGCATCTTGCACATCGTCTTGGAAATTGAGTCCGTTAAATCTTAAGCCGTGGTGGCCTTATCGGAGACCACGCCCATTATGTGAAGGTATGTGAAATTAATTAGCAGTAGCTACACGCGGGTCATTGCTATGTTAATTCGCGCTCCCGTTTGATCATAATAATACAATTAGAGTTATAGCCTGCCAGGCAGGAGCGTCAGAAAGGGGATCGAAGGAGAGATGACTTCCAGCCCGGACGGCCTTTGAAGCCCTTCCCACTTCCCCCATGGCCCCCACTTCCACCCCTCCCACAgaaacaaaaaggtgagaaaaaagAGGGGAACTGAATGAGACCGTACCTTTATTCTTCAAACTGTGAAAAACATGCGTACTTACAATGCGCCTTATATTCGACTGAGACTGTTTAGACAGAACCATgtcttccttttttcttttgcgtACGGAAAGCATACCGCAAAGATATATTAAAATAACATTGACTCGCATTCTTTCAGCAGAGACGTTATACCCGTTGCCCTTGCTTCCTCCAGAGCTGGGGGCGTACGTTAAAGAACCTACGGCACTGTATAAAGTGAAGATGCAGTCCTCGGTGTTCGTACCCTCTGCCTCTATCCATTCCATTTCATTGATATAGTTTGAATGAGTGAAGTTTAAAAAGGAGTATATCGGTTGGGTCTTGGAATACACCATATATACTTCGAACGTTCTTCTGAGGACatgctttgtttcttttttttttcttgcttgaAGTCATCTTTTCTTCATCTCCTTTCTGGCAAATCATAATGAAATTTTCCCTTCAACTCAAAGAGTTATAAATTGTACATAACGCTgtcagaaatatatatatattgatcTTAACAATAATTTGTGCCATGGAGATACGTTAAAACGTTTATAATCATACATTTTTTCCTGGGAAGAAAGTAGTAGTTATCTTCAATCCAGCGGCATTGTAGAATATAACTATTTTCTATATCACAATGTAGTCTTTTAACTGTGTACAAAAACAAGAGAAGCTGAAAAGAGTGTTCCCCTTTGCATCCTGTATTTATCAAATTAGACAAATTTCTGACCAGAAGGAAATTTGCAGGGCAGATCGAGACCGGTACCTGATTTCACATAGTGATCAGTAAGCAGATTACGTCATGATTCTGTAGCATCAGAAGGGTTCCTAGGAAGTATTTTGGCACGTACACTGCATCTGTTCGATTGACTTTAGACACGGTACCGGTGGAatctcgatttaacgaacctctatataaagaagtcctcgatataacgaacgatattcttcagcccggcttttaaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005164	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0009898	Cellular Component	cytoplasmic side of plasma membrane	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan