Gene detail

Detailed information of pspe_0.1.m1.67082.m1 in Pachyseris speciosa

Genomic Location: Sc0001476:104938...117312
NR annotation: XP_029185508.1, ER degradation-enhancing alpha-mannosidase-like protein 1 isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.67082.m1

GGGAAGTCGGTCGTTCACTTCCCTCGGTATGTTTGAGGATGTgtcaagttttcacaatttttatagCTTTCCTAGTCATGATCACGATGCTAGAAGCTAACGCAGATCCCCAGAGTAGTTGCAgaccaaattcaaatggaaAATACCGCTATATCTCCGAGACCGAGCGTCTCAAACTTCGGGAAAAGGCCAGGCAAATGTTTTACTTTGGGTACGATAACTACATGAATTTCGCCTTCCCTAAGGATGAACTTGACCCGATTCATTGTACGGGAAGAGGCCCAGACTATGAAAACCCGTCAAATATTAATATCAATGATGTTCTAGGAGATTATTCATTAGGATTGCTAGAGTCACTTGGCACATTAGCAatAATGGGTAACAGTAGTGAGTTTAAGAGAGCTGTTCAGCTTGTTATGGACTCTGTAAATTTTCAGAAGAACAATACAATTCAAGTATTTGAAGCAACAATAAGAGTGCTAGGGTCCTTACTGTCAGCTCATCTGATTATCAAGGATCCACTTCAACCTTTTGGTGACATGGTGCCATCTGACTATGATGATGAATTGTTGCTTCTTGCTCATGATGTGGCAAATAGGCTGCTGGCAGCTTTTCAACAATCAAAAACACAAATTCCCTACCCTAGGATAAATTTATGGAATGGTCATCCATCTACCTATTATAAAGAAACCTGCACAGCAGAGTTCGGGATCCTGAGCAGGTTATTGGGAGACCCTACATTTGAAAATTTAGCCAGGAGAGCTGTGGCTGCTCTGTGGAAACACAGATCAATGGAAACTGGACTTGTTGGTAATATAATAAATGTGGAGACTGGAGAATGGACAGGGAAGATGAGTGGGCTGGGGGCTGGTCTGGACTCATTTTATGAGTATCTTCTGAAGGGCTACATTATGTTTGGTGAGCCAGATGATTTGAAAAGATTTAATGCTATCTATAAAGCCATAAATAAATATCTACGAAGAGGTCGACTTCGTTGCAATCAGGGGAATGGAAGCACACCTTTATATGTTAATGTGAATATGGACAATGGTGAAACAGCAAACACGTGGGTAGACGCACTGTCTGCATCATTTGCTGGAGTTCAGgTACTGAAAGGAGACATCACAGAAGCTATCTGCACTCACGCTCTTTACTATGCCATCTggaaaaagtatgaagcaatgCCAGAGAGGTTCAACTGGCACACCAAGCAGTCAGAAGTTCATTTCTCTCCACTGAGACCTGAGTTGGTAGAGTCCACCTACCTTCTACATCAGGCCACCCATCATCCATTTTACCTGCACGTTGGCCGAGAAATCATGAGAGATATAGAAAGACACGCTAAAGTCAGGTGTGGCTATGCTACTTTACACAATGTTAATGATAAGACCCAAGAAGATCGAATGGAAAGCTTTTTCTTGAGTGAAACGTGCAAGTATTTATATCTTCTGTTTGATAATGAAAATCACGTCAATCGAGATGCGTCAAACTACATTTTCAGCACCGAGGGACACATCTTTAGGCTGGACTCACAGTTTAGGCATAAACGTGAGGAGAGAAAATCGAGGAAATTTATTCACAAGGCAATAAAACAATCCTACACTCGGTCCCCTGGAAGATACAACGACAGTATTGGGTGTGCGAGGTTTTGTGGTAATGTCAACAGTCCTCTTCCCATGGATATTCGATATTGGGAGGCAGTGGAAGCAGCAGTTGGGTTCTAACAGTGCAACATGATATATACTACACAGTCGTCAACAAACGCTGGCGGGGCATTCTTGAACGGATGGAATTTTCCTGCCATTCATCTGTTTGAAAAGATCAAGGTCCACCAGCGCTGAGGGGTGTATGAAGAATTAGTGATGACTTTCTAGCATGTACTGGGGTTTACTCTGATCACGTCAACACGGTCGAGTAGATATCTTCAGGCAAAGACTTCGCGAATATTTTTTATAACATAGCTcgtaaattcgtgtagtcaaattcaattgcgcgagcgtgcttcatattcatattgtgcacgctgatgatgtagcagagggaatttctcttatgagaatgaatatatgaaaaaccatatatttgaactgctgattaatgatttaatatgtgactgatcatcgcagttatgaatacaACATTTAAattaccgcgttgaaaatgttataaaacaattgggtCATGCGTCAGCTATGAGTTCATCGAGaaatgaagcacttgggaagtttggagagcactcaagaagctagagctcggctacgcctcgagcaactcttgcGCAACTCTTTGCATGCGATTAAGAGAGAGCACCCTGGGAATCACACCAGTTGGAATTGTACTCAGTTTGACATGAAATAGTATTGGACGTAATAAATTTTGTACTTAGCCGTGGATGGTAAAACTTTAGGCAAATTGCATGGGGAGTTAAATTTGAGAATTTTTTGTAAGGGTGGGCTTGTACAGTATGTCGAAATATAATATTTTTGTACAAAATGGAAAATAGAGTTGAAAGACAATTTTTGTGTTGGTCATCACTGCGCATTTTAACGACCGCTCACACGAGAATAAGGGATGAACAGAGAGATACAATACTCGTCAAT

Protein

Uniprot

Uniprot term	Description
Q925U4	ER degradation-enhancing alpha-mannosidase-like protein 1 OS=Mus musculus OX=10090 GN=Edem1 PE=1 SV=1
Q92611	ER degradation-enhancing alpha-mannosidase-like protein 1 OS=Homo sapiens OX=9606 GN=EDEM1 PE=1 SV=1
O94726	ER degradation-enhancing alpha-mannosidase-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mnl1 PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01532	Glyco_hydro_47	Glycosyl hydrolase family 47	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012341	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR001382	Family	Glycoside hydrolase family 47	Interproscan
IPR044674	Family	ER degradation-enhancing alpha-mannosidase-like protein 1/2/3	Interproscan
IPR036026	Homologous_superfamily	Seven-hairpin glycosidases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45679	ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004571	Molecular Function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:1904380	Biological Process	endoplasmic reticulum mannose trimming	Interproscan
GO:1904382	Biological Process	mannose trimming involved in glycoprotein ERAD pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10084	EDEM1; ER degradation enhancer, mannosidase alpha-like 1	-	Lectins	ko04091	deepkoala