Gene detail

Detailed information of pspe_0.1.m1.67453.m1 in Pachyseris speciosa

Genomic Location: Sc0001515:94991...97801
NR annotation: XP_028418834.1, uncharacterized protein LOC114544373 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.67453.m1

ATGGCGGCTTTCATCGCCTGTTTCGTCGTTATTTCCCTCGGGTACTTCATTGGCCTCAAGAAAAGTTGTTTGACTCCTTCGACGTCTAGGCGCTTCCTAGGTTATATTTGCGACTCTGAAAAGCAGGCTTTTCTCCTTCCACAAGATAAAAAAGATAAATTCGCGGAACTAAGAGAAGCCATTCTTAGCAAGAAAAGCGTTTCTGTTAAAACGCTTCAGAAGTTCGCCGGTAAAACTACATCTTTTGCCCTCCTCGTTCTGGCAGCTAAGCTATACTCCAATTCTATGTATCAGGCTATTTCTCGAGCTTCTAAGGCTTCTTCTCGCCAAATTAAACTCCTTCCTACCCTTCGAAATGAAATTTCCCATTGGCGTTTCCTTGATACTTGGCAAGGTTTCTTGTCTTGGAGAGACGAATCTCACTTACAGGTTCAATTGTTTTCGCATGCTTCTAATTTTGGATGGGGCGGATGCCTTTTTAGCCCTGGTCTTCCCAAAGTTGTGATTCGTGGTTATTGGGATGAAGCTGATCGAGGACGTCCCATCATCGTCAAAGAGATTCAGGCCCTACGTCTCACGTTGGAAAATCTCCTTCACCGCTCCGAAAATACCAGGGTGGACGTGTCTGTAGACAATAAGGCCGTAGTGTCGAGTTGGGAGAGTCAAGTCTCAAAATCCCCAGAAGTTTCTGACGTAATGAAGTCAATTTTCCAGTTTTCACTCAGTAGAAATCTCTCTATTTCATTGCAAtatgttccatctcgaagtaatCCCGCGGATTTGCCATCCCGGACCCTTTCAGATCTAGACGCTTCACTTGACATAAAGCCATTGAATTTGGTGGACTCAACCTTTGGGCCTCATACCATAGATTTAATGGCCCTCCCTTCTAACGTTAAGTTGGATCGCTCAGGGCGTCCTTTAAAGTTCTTTTCTCCGTTTCCATGCGTACAGGCCCAAGGAACCAATGTCTTTTCTCAAGTGTTATCGCCCAGCGAAAACGCCTTTGTATTTCCACCATTCACACTTACTGGCCCGCTCCTGAAGTACCTGGCGTCGCAACCATGTCCTTTTACAATGATTGCCCTAGATGTTTCGCCCAGAAAATACTGGTGGCCCCTCCTCCAGCGTCAGGCTACCGTTGCATTCAAATTGGGCCAAAAGGAGGATAATTCAATTCTTCTATTCCCAACTAAAACAGGCCTTTCTACTTGGGAATTCAGACCACTTCAATGGGATCTTTGGGACCTCCCCTTGGTAGCAAGAATATGGGTTCCCGCAGTCAGTTGCCCAAACTGTTCCTACCCAAACGATGCTTCTTTTGCATTTTGCCAACAATGCGGTTACACACGAAGGAAGGAGACCAACGTCCCAGATTCTGAAAAAGTTCCTTTAGACCTGGCTGCCATTGACGAACGTCTCGAGGCCCTTCGCAAGCTTAAGAGCGAGAAACCCTATCAGAAACAGAAGTCAAGCCTTCAGCACGAACTCGAGCGTTTTCTTCGCTCTCTAACCTCTCCTAAGTCTCTTATGTCGGCCATCCCACAGGATTTAATGAGGTTTCTTATTTGGAAGGATAAAGGAGGGAAAACTAAGATTGATCTTCCCCAGTGTAAGCACTTTGGGGTTTCCGGTAAAGTTCAGTGCTTGTGTCCAACCAGACTCGCAGCCGGAACTGTTGATAATTTGATACGGAAATTACGTTCCATTTTTATAGAAGCAGGAAGGGGTAATGCCTGGAATGATATTCTCGGTGTAGGGAACCCGGCAGCCCATCACTCCGTGAAACAGTACCTCACTTTAGTGCGTGAGGAACAAGCAAAGGCGCGAGTTGGTAAAACACAAGCTATTCCTATCTTCTTTGGAAAGTTGATCAAGCTCTGTTTTTATCTCAGAGACTCCGTTTTCTCTAAAGGTACATCCGCAGCTCATCGCTATCTTTATGCAAGAGATCTAGCATTTTTCTGTCTTGATTTTTATTCAGGGGATCGTGGCTCAGACCTGGGAAATCGTTTGTCTCCCAGACGGGGATGGGTTTTTATTCCGCCACACTTTTGGCAAGACCTTAAGGGTGGCGGAAAAACCAATACCCTCATGATTAAGGAATGCCCGGGCCCCAAGTTCTGTCCGGTAGCGAATTTAAGGTTATATGTTAAGTTATGTGATCTTATGTGCGTAAACTTAAGAGGTTATTTATTCAGGGTTTTAAATAGCAAAAGCGAAATTTCTGAAGATCATTTCGTAGGTTCCGCCATAGCTAACAGGCTCGCTTTGCACCTACGTTCAGCTGGGATTTATGACGGAGAAACAATGCATAGTTTTAGAAGTGGTTGCTCGATCACTCTGTCTTTGCTGGGCGTACCTTCGGAGGACGTGGCCAGGCACGTTGGGTGGTCTTCTTTTGTTACAGCCGACTATTACTCGCAAACGAGCAAGGTGATGAATTCGGATTCAGTCGCAGCTTCTTTGGCCATGAGCACGGCCCCAAGTCCAACAGAGCGGGAGCCGCTTGCTGCTGTGGTTACCCAGGCCTTCTCTGAGAAAAATGATACGAGGAACCTTTCTCTAGCTTTTCCTTAG

Transcript

pspe_0.1.m1.67453.m1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04852	ALOG_dom	ALOG domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR006936	Domain	ALOG domain	Interproscan
IPR052055	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan