Gene detail

Detailed information of pspe_0.1.m1.67644.m1 in Pachyseris speciosa

Genomic Location: Sc0001538:102236...104710
NR annotation: KAJ7371321.1, Thromboxane-A synthase [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.67644.m1

GCTCATATCCAGGACTATTAATATGGACTCGAGCATTAAAAAAACACTGTAGGACACCAGTGGTACATATTTTACTCCAGTGAATGCTGTGGTGACGACTgccattgttgttgttctgtATGTATTCTGGAACGAAGCCCGTAGTGAAGCCATTCGCAAGGAAATTAATCTTCCAGGACCCAAGCCGTGGCCTTTTTTCGGCAATTTGCTTGAGGTCAGAAAATATAATGGCATCCACCTTATGTTGTATGACTACATTCAAAAGTACGGCAAGGTGTTTTCGATCTCAGTGGGAAGAAAGCCCACTATCGTCATTGCAGACCCTGATTTCTTGAAGCACATTCTTGTGAAAGATTTTTGGAACTTTCGAAATCGGTTCATTAAACTGAAGCCTCCTGGTGCAATAACGAAAGGAGTATTCCTTGCGCGTGATGAAGACTGGAAACGGATCCGTGCGACTCTCACGCCGTCCTTTAgtgcaaagaaaatgaaaggaaTGGTGTCCTTGATCGAAGAATCTCTTGACAGGGTCATGAAGAAGGTAGATACCCTAGCTGATACCGATGCATCCGTGGATATGTTAAATATTTTCAGCAGAATGACTCTAGAAGTTATTCTATCCACCGCGTTTGGTGTCCAGGCCGACATTCAAAACGACGAGGACAGTTTGCTTTTCAAGAGGGTCAAAGAGGTTTTCCGCACACCGTGGATAGTCAATGTAATGAGGCAGTTTCCTTTTGGAATGTTTGTGTTAAGGAGTCTTTCACGACTGCGTGGACGGCGAGGTTACTTTGAGAAGGTCGCCTCGGACATCGTCCATGAACGAAGAAATGGAGGGCCGCTGGTGAGAGAAGACTTAATGCATTTGATGCTGACGGCGCACGAGCAATTCAACGACGAGGGTGTCTCCAAACTCAAGGATGAAGAAATAATCGGCCAGTCCCTGACCTTTCTGTTCGCAGGCTACGAAACCTCGAGCAATACTCTGGGTTACATCACCTACTATCTGGCTTTAAACCAGGAAGTACAAGACAAGTTGAGAGAGGAGATCATGTCAGCGGTCAAGACCAACCCTAACAGCACACTTTACGGTATTGCGCATGGCATTGAGTACCTGGATTGTGTCATAAGCGAGACTCAACGATTAAACCCACCACTGGCTCATTTAAGCCGGGAATGCGTCGAGGATTATGACTTCAAAGGAATTCGTTTTCCTGCAGGATTCGAAGTGACCGTTCCCGTTTACTCCCTTCATCGTGATCCCGACGCTTGGCCCAATCCCGAGAAGTTCGATCCCGAGAGATTCATGAGTCCCGCGAAAGACAGCCGTCATCCTTACCAGTTTATGCCTTTTGGTTGTGGTCCAAGGTCCTGCATCGGAATGAGATTCGCTCTGATGGAGATCAAGATTGCCCTGGTGAAAATTTTGATGAAGTACAAGTTTGTGCGATCGTCTGAAACCCAAGTTCCCTTGAAAATTCTTCCCGGGATCACTTTGGTTCCAAAAGATGGAGTCCACGTGCGGATAGAGAAACTTTAAGATCTTTTTGGCTTGATTTTacgtttttcttttcctttgatTTCTATTTTAGTTAGTTTAAGTTGTAACCAGCCCTTGACAATTCCTTTTAGCCAGTAGAATCGAAACATGACGTATGAACATCAAATGGGAAAAGGGGGTGGGAGGAGAGTTTGGAGATGGACAATTCTTTCAATTGTTACCAAAAATGAAATGCGTTGTTGATCATTAAGAGAAAAAACACCAGAGACGTAGTTTACTAGGAAATGTTTAGCCTCCCGCGCAGTCGGTTTTAGGGGATTCGtattagtggggaggaggtgaaatacgagtccctgAAAACGACATCGTGGGAGGCTAGGAAATGTTTTGAGCGTTCCAAACTTGTTTAGTTGTGTGATAGTTCTTTGCTTCTGAAATTTGATGTCAGATGAATTTGACACTTATTACATTACATTTATAAGACGACGCGCTTAGACCACGACAGAATTATGATTTAAGTGTATTTGATCTACTCTATACGGATACATAAATCAATATATACAACAAACGTAATTAAAAGGTACGGATAAGGAAAAGGGCAAAAGATAGAAAAACTAATACTTTCCCTGTAAACAGTATAattgtaaagcctggttttcactagcgacgcaagcacaagcgcaagcataaatagcttatgccaagtgaacgctt

Protein

Uniprot

Uniprot term	Description
Q29496	Cytochrome P450 3A24 OS=Ovis aries OX=9940 GN=CYP3A24 PE=2 SV=1
P05183	Cytochrome P450 3A2 OS=Rattus norvegicus OX=10116 GN=Cyp3a2 PE=1 SV=2
P08684	Cytochrome P450 3A4 OS=Homo sapiens OX=9606 GN=CYP3A4 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00067	p450	Cytochrome P450	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002401	Family	Cytochrome P450, E-class, group I	Interproscan
IPR017972	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR036396	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR050705	Family	Cytochrome P450 3A	Interproscan
IPR001128	Family	Cytochrome P450	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24302	CYTOCHROME P450 FAMILY 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004497	Molecular Function	monooxygenase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0008395	Molecular Function	steroid hydroxylase activity	Interproscan