Gene detail

Detailed information of pspe_0.1.m1.6796.m1 in Pachyseris speciosa

Genomic Location: Sc0000011:2281519...2301758
NR annotation: XP_027049678.1, cytoplasmic dynein 2 light intermediate chain 1-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.6796.m1

CTCACAAATTGCACATTGTCAACAATTTTGGGATTTCAAGAATGATGTTTTTAGCTAAAAGTAACATGATATAAGTTGGTTTTGCCCAAGACGACATCGTCAACTTCACAATGAGCGACAGGAGGTCAGAAAAGACTATCTGGGACTTGGCAGTCGAAGAACGAGAAAGGGGAGAAACCAATTCAAACAAAGATCAACAAGATGAATCACAGCTTTCCAACAGTGATGAATCCAGCATTTTTTTCCTTGGCAATAAAAACTCAGGGAAAACCTCCATTATTTTAAGATTTCTTGATAGAGATGAAGCCCCAAAGCCCACTACTGCACTGGATTACACATTTGGACGAAGAGCTAAAACAGGGCATAATATTGGCAAGGATATTGGCCACATATGGGAACTTGGAGGCGGAACATTCCTGTCCAAACTGATTGAAATTCCTATTACGTCTGTTACTATCAGGAACATGGCTATTGTGGTTGTGTTGGACTTGTCTCTTCCAAATGAACTGTTGTACACAGTGGAAACACTTCTCTCTCAGATAAAATCTAAAGTCAACAAAGCACTGGACGATTTAGATAAGAAGCACCCAGGCTCTGTACAACAGCTTAAGAAGCAAGCTTGGAAGGATAAATCTTCTATTGATCCCTTTCCTATTCCACTTGCTATAATTGGAGGCAAATATGACATCTATCAGGACTTTGATCCTGAAAAACGGAAGATGATCAGCAGAACACTGCGGTTTATAGCACACAGCAATGGTGCGCACTTGCAGTTCTTTAGTACCAAAGCTGAGGGCCTAACTAACCGCACCCGGGGACTGGTGGGGGCACTTTTGTTCCACACCCCTCTCAAGGCACCGCCAGTGGCCAGTCAAGACATGGGAAAGATGCACAGCAGGGACCCGTACGAGCTGTGGAAGGCTGCCTTCTCCACGTTTTTTCCTCCTGAGAAATCACAAGGGAGGCATACCAGCGAAGATCCGTCCAAGGATCCGCAGTATGCTGAACCAGCAGTCGACGCAATGAGAAAGCAGAAAGACGAGGAGTTAGAGAGATATCGGAAACTTGCCATGCGGAAAGTCCGTGATTCATCGCGGGCCACTGGTGGTGAAAAGCGCCCACGGTAACGATGGACAGCGCAAATGTTACTGATGGCTCTGAACAATCCCCATTGAGAGAGTGATACCAGTGTTGTGGTTAACCAGAATGAGCTCTCTGTATTGAAATATTTATACTGTTAACTTAAAAGTTCTGTTTACTTGTAAATGTTGTGAAAGCTCCACTACCCTTCTCGAGTTAAAAAAATGGAGCTTCTTCGTGGTCGCTCGTTGAAATTGGTGACGAGACCTAAGAACACAGacttcaaatcaaatcaaatttaagctcgatagcgtcgGAGTGTTGCCCAATTCGCgagctcatgtattaaacgtttaGCATTGggtcgaattggaatttagtaGTGTTGGTttcggatcgaattggaatttagtagtgttggtttttgtggaaaacctctcggagcagaagTCAaccaaactcaacccacatatgacgtcgagtccgtggaaggcgagtgctctcaccactgcgccatccctgctccccaaagaCTTCTACGTTTTGAACGTATTAAATCTGGTTTGAGACGTCTGTTCATCCCACTCCTTGATTGGTGTAGCACTTGTTTGGTGTTTCTGAATTCATCGTTGCACTTGTCACACTGAAAACAAGGGTGAAAAAAAGTACTTCAAAAAGGTTTAAACAGTTCTCTATCACTCTTCACACGCAAAACTCGAAGGGAACGTGAAAGAACTCACATACGGTTCGCAAAGTTTAGGGAACATATGTCCCAGTGTTATAGTTGACAAGTCTACGTTATTGTCTGCCGTTTTCTGCTGACACAACGTCCCCGGGGATAGAAATAGAAATCTTCGAAGAGTAGTTCCATTTGCGTGAAATCTCTAACCTCATGCCAGAGACGTTTTTGCTCGCGCGATAGTTTTGTCGAAAGGGCGTtactttctaaagaaactgtggtgctgcgtcggtgag

Protein

Uniprot

Uniprot term	Description
Q32KV4	Cytoplasmic dynein 2 light intermediate chain 1 OS=Bos taurus OX=9913 GN=DYNC2LI1 PE=2 SV=1
Q8K0T2	Cytoplasmic dynein 2 light intermediate chain 1 OS=Mus musculus OX=10090 GN=Dync2li1 PE=1 SV=1
Q8TCX1	Cytoplasmic dynein 2 light intermediate chain 1 OS=Homo sapiens OX=9606 GN=DYNC2LI1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR040045	Family	Cytoplasmic dynein 2 light intermediate chain 1	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13236	DYNEIN 2 LIGHT INTERMEDIATE CHAIN, ISOFORM 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005868	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0005930	Cellular Component	axoneme	Interproscan
GO:0035721	Biological Process	intraciliary retrograde transport	Interproscan
GO:0035735	Biological Process	intraciliary transport involved in cilium assembly	Interproscan
GO:0036064	Cellular Component	ciliary basal body	Interproscan
GO:0045504	Molecular Function	dynein heavy chain binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10417	DYNC2LI; dynein cytoplasmic 2 light intermediate chain	-	Cytoskeleton proteins	ko04812	deepkoala