Gene detail

Detailed information of pspe_0.1.m1.68118.m1 in Pachyseris speciosa

Genomic Location: Sc0001591:19821...26498
NR annotation: CAB3992213.1, leucine-rich repeat-containing DDB_G0290503 isoform X1 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.68118.m1

ATGTGCTCAAACTTCTCGTCAAGTATCCCCTTATGCTACTCCTCAAACGCCGGCTGTCACGAACAGAAATAcacctactcctcaaacgcCGGCTGTCACGAAAAGAAATACACCTTCTGTTTCATCTTTGCCACTGACTCGTCAACTTCTGTTGCACTTGGATTCCAAGAACACCGTAGATTATTCGGGTTTAACCCTACGGCCTGTCAGACGACAAGCAAAAGACGAAAAAGGGAGAATGGTGGAACGTCGAAAAAGGTGAAACGACCCACATGGACCAGGACTTTCGTGTGCCTGGGGAATACAAGGGAAGAAAGAATGCCAACCCCCAAAGAGTACCGAGAGCTCAAAGCTGCTGATCTGGGTGAAAAAAGATTAACATTCTTCGCTGACAGCACCTCTGTTGATTTTGATAATAAATTGAAAGACGCCTTCCCCAAACTGGAGACAGCAGGAGGCTATACACTGCTGTGCGGGAGTCACACTCGACAGCTTGAAGTTATCAATCCTCCTTACAATATACCGAGACTTAAAGAACATTTTGTCGGTCAGGGAAAGCTGTTCATTAGGCCCCTGCAAAAGGATCTGGACATAAGCCCGACTGGCACCTCTTGGGAGGATGAAGAGGAAGATGACCTGGTAGAAGTTTGTATGAAATGCAACAAGTTGTTTTACTTGTCAGAATTAGCTGACCATGTGGAGAACTGCAGCAAAGAACATGGCAAAAATTCACCAGAGGAAGATTCCAATATGCATGTTGAAACTCCAAGCAGTCCACAGTTATTGGTTCCTGGTACACTGCATACTGAATGCATGATGTGTCCCACTGATGCAAATGTAAATGTCTCTCAAAGTTCTGAAAGTACACCCATTACTCCGCCAGCCATAGTGAACAGTTCACTTACATGTAGTGATGACCAAGCAGGAGATGAGGAATTGGAAAGAGACTCAGTAACACATGAACCTACATGTAGCATATCAAATAACATTGAAATTGTGCAAGCCAGTACTCCAAGATGTGCATCTGTGGATGAAGCTGTACAGGAAACAGTACAACTATGTCAACAATCCAATGTTATAAACAACCCTGTGGAAGTACTGCGTGTTTTACAAAGTCGAATGGTCACTGGAAGGCAGCTTGATATTTCAGATCCTTCCCAAACAGTTGAAGGCGAAACAAATCAAATATTTGTTGACCGCTTCAATCTTCAGAAAACTGGATTTGATGAGATAGCAGGTCTTGAGGACTTACGCTTGACACTGGAGGTTCAATTTTATAATGAGAGAGCCGTGGACTTACGTGGACCCAGAAAAGAATTCTTCCTGCTAATTTTGAGAGACATCAAGGAAAAATTGTTTGATGATGGTATAAAGCAGAAccaagaaaaagattaccacaCAGTTGGAGTTATCTTTGCACTTAGCATGTTGCAGAGTGGAAAACTTCCCAGGTTTCTACCAGAAGAATTATTACAGGAAATCTTTATGGGTGTCAATCCTGCTCCATGTATACTTGCAATTCGAAAGGGTCTCAGTGAGCTTGGGGTATACCagGTTGTGAAAGAAATACCTCTTCTCCTGCATCTCTTCCGGAAAGTAGAAAAGGACACTTTAACACTGAAGCAGTTAACAGCACTCCTAGAGCCTGACTTCAGTGAGGAAGGCACCAACAGCAGAAAGTTTGAAGGAGAAGTTTACAGCATCTTTATTAAGTACTTAAGAGAAGTTGCACGTGGAAGAAGAGGTGACTTGACATTGGAACACATCTTGCAGTTCACTACTGGTGTTGACGAAGAGCCAGTGCTGGGATTTTCATTACATCCCCAAATTGTATTTGTTGAGGTCTTTGGTGGTAATTTCCTACCAAGAGCTAACACATGTACAAATTGCCTCACCATTCCAAGAGGAACATTAACCACCCCacttttacaagttaaagaactACACAATTTGTATGACTACGCTTTTGCTAGCGCCTTTTTTGGAATGATATGA

Transcript

pspe_0.1.m1.68118.m1

CAATCCTTCAATTCAAACACTCAAACTTTCATCGCAAACACGCTGTCCTTCGTCGTCGCCTGGACCTAGCCCGGCCACGCATGCGTAGTAGGAAGACAAATTCGCGGCAGATGAGCTGAAGGCTGGAATCGGCGCGAAGACGGCTTCTATTCTGTGCTCTAGAATTTGCtctgtatcatcttgatttcTTTTCTCAGCCATGTCTGTCGCAAAATGTAAGGAATTACTGGACGAAGTAGCCAAATTATGTGCTCAAACTTCTCGTCAAGTATCCCCTTATGCTACTCCTCAAACGCCGGCTGTCACGAACAGAAATAcacctactcctcaaacgcCGGCTGTCACGAAAAGAAATACACCTTCTGTTTCATCTTTGCCACTGACTCGTCAACTTCTGTTGCACTTGGATTCCAAGAACACCGTAGATTATTCGGGTTTAACCCTACGGCCTGTCAGACGACAAGCAAAAGACGAAAAAGGGAGAATGGTGGAACGTCGAAAAAGGTGAAACGACCCACATGGACCAGGACTTTCGTGTGCCTGGGGAATACAAGGGAAGAAAGAATGCCAACCCCCAAAGAGTACCGAGAGCTCAAAGCTGCTGATCTGGGTGAAAAAAGATTAACATTCTTCGCTGACAGCACCTCTGTTGATTTTGATAATAAATTGAAAGACGCCTTCCCCAAACTGGAGACAGCAGGAGGCTATACACTGCTGTGCGGGAGTCACACTCGACAGCTTGAAGTTATCAATCCTCCTTACAATATACCGAGACTTAAAGAACATTTTGTCGGTCAGGGAAAGCTGTTCATTAGGCCCCTGCAAAAGGATCTGGACATAAGCCCGACTGGCACCTCTTGGGAGGATGAAGAGGAAGATGACCTGGTAGAAGTTTGTATGAAATGCAACAAGTTGTTTTACTTGTCAGAATTAGCTGACCATGTGGAGAACTGCAGCAAAGAACATGGCAAAAATTCACCAGAGGAAGATTCCAATATGCATGTTGAAACTCCAAGCAGTCCACAGTTATTGGTTCCTGGTACACTGCATACTGAATGCATGATGTGTCCCACTGATGCAAATGTAAATGTCTCTCAAAGTTCTGAAAGTACACCCATTACTCCGCCAGCCATAGTGAACAGTTCACTTACATGTAGTGATGACCAAGCAGGAGATGAGGAATTGGAAAGAGACTCAGTAACACATGAACCTACATGTAGCATATCAAATAACATTGAAATTGTGCAAGCCAGTACTCCAAGATGTGCATCTGTGGATGAAGCTGTACAGGAAACAGTACAACTATGTCAACAATCCAATGTTATAAACAACCCTGTGGAAGTACTGCGTGTTTTACAAAGTCGAATGGTCACTGGAAGGCAGCTTGATATTTCAGATCCTTCCCAAACAGTTGAAGGCGAAACAAATCAAATATTTGTTGACCGCTTCAATCTTCAGAAAACTGGATTTGATGAGATAGCAGGTCTTGAGGACTTACGCTTGACACTGGAGGTTCAATTTTATAATGAGAGAGCCGTGGACTTACGTGGACCCAGAAAAGAATTCTTCCTGCTAATTTTGAGAGACATCAAGGAAAAATTGTTTGATGATGGTATAAAGCAGAAccaagaaaaagattaccacaCAGTTGGAGTTATCTTTGCACTTAGCATGTTGCAGAGTGGAAAACTTCCCAGGTTTCTACCAGAAGAATTATTACAGGAAATCTTTATGGGTGTCAATCCTGCTCCATGTATACTTGCAATTCGAAAGGGTCTCAGTGAGCTTGGGGTATACCagGTTGTGAAAGAAATACCTCTTCTCCTGCATCTCTTCCGGAAAGTAGAAAAGGACACTTTAACACTGAAGCAGTTAACAGCACTCCTAGAGCCTGACTTCAGTGAGGAAGGCACCAACAGCAGAAAGTTTGAAGGAGAAGTTTACAGCATCTTTATTAAGTACTTAAGAGAAGTTGCACGTGGAAGAAGAGGTGACTTGACATTGGAACACATCTTGCAGTTCACTACTGGTGTTGACGAAGAGCCAGTGCTGGGATTTTCATTACATCCCCAAATTGTATTTGTTGAGGTCTTTGGTGGTAATTTCCTACCAAGAGCTAACACATGTACAAATTGCCTCACCATTCCAAGAGGAACATTAACCACCCCacttttacaagttaaagaactACACAATTTGTATGACTACGCTTTTGCTAGCGCCTTTTTTGGAATGATATGAATTTGCAGAGCTGAGTATTCCATTTATTCCTCACATTGTCATGCCAAAGGTAAAACCTGGAGTTTGGTTATGCGTTATGTGCAATGTTAACAAACAagtttgcatgcatgttttaattttttatttgcttttaccCCAATCGTTTCATTTCCACAGATGAAATTAAGTGTTCGTGCTATTTGTTCCAGTACTTCAGAGAATTTTGCATATAGCACTTAGATTTAGAATGTCATTATATTTTATCACAGAAGGTAATTAGCAGTGCATCTAAAGCACCCAATTAGCAGACGTTTTGGTCTCAGTTGTTACATTTTATCGTTGTGTTTTGAAAATTGCTGTGAGTACGGCATCTTCCAATTTACTGATACATGTAGTTTCCCCAACTGGAGACTGTCCACGGATACTGTTGTGTTTTGATGACAAATAGGGGTTTGTTTCAAAGGCAATGACCCACTGGGGAAAAGAGAAGTGAGACAGAGGTGGCAGTCCTAAAAACGTGGCAGTCCTTAGAGACCTTTCCATGTGTTAACATAATTCACTCAGCACCGTTTAAAATGCTTTGAAATGAACAGGACTTCCAAATCTTCTGATTGCTCCTCTCCCCTTTCCAGTTTTGTTCTCTAATGTTGTTTTGTGTGCCGTAAGCACACTTTTAGGTTATAGTTATCTCCGATATTACAGTACTTTGTCAGGTAGAACTTTATAAGGAGTGATTCTCACAAAAGTAAGTTCTGTTTTGAAGGATAGAACTGATGCTTTGAGCTGTACGCTAGGCAGCACACAGGCAACTTTGGGTTCAATGTTAACTAAATATAGAGTCTTGATCAGAAGTAATATCAGCTTATAACAAAGGCTGATGGATATCAATTATGAACGGTTTCACGTCTCCCAAACAAATAACTGTTGTATCTGTTTTTAATGTATACACTGTACAGCTACTGCCGGCTATAATGGAGAAGATGATTTATGTTCTATTCTAGCATTAACCGCCCTTTGTACTAAAGCAACTGTTTTTAAGTATAAGTCAATCCCATAATTGTCACTTTCTTGAAGTGGATTAATTTCCTCGGCAAGCAACTGTGTCTTGTGTTGATCCATTGTAAGAGTGGGTGGTACTTCAACAACCTGTCCATCAGACTGCAGTGGCCCATCGTGTTCTTAGGTAAAGGTCCTCTCCAATCTATACCATACCCCTGAAAATTTTCCTGTTGACAGAATTCAATTTTTCAGTGGGGGACATTTCAACTGAAAATCAATGGTAGGGTAGTGGCTTACCCCAAACATTTCTTCCGACACAGTAGTGCACGATGCTGCACTCTGCTGCATCCCCCAAATCCAAAGCTGTCTAGGGGTTCTATTGTGGGCGGATGAAAGGCCGTGGTTGATCCATCCGTTGACAAAATTATCCAGCTGCGCATTAACATGGGGCAAAATTATGTAATGCAGGGAAAACATGTGCACTTCATCACTCACATCCAAGACTCTGTTCTATTCCATATGGCAGAAAAGTTAGTAAAAGGTTGCGGTCTTTTGAAAATAAAGATCCCGCCATAGTCGCTCAATTCGCTGGTTGTGAACGCTTTTTCCAGCGATCATGCTACCCCTTCCGGGACCACGCCTGGGATGGGTCAACATAAATAGGGAGACGTCCACGTTCTCCCCACCCTTGTCCGAACGTCCTCGTGACGGCAATCCATATTGGCGAA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|HECT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00632	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035983	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR000569	Domain	HECT domain	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22371	G2H3; G2/M phase-specific E3 ubiquitin-protein ligase	EC:2.3.2.26	Ubiquitin system	ko04121	deepkoala