Genomic Location: Sc0001675:95236...97800
NR annotation: CAH3026055.1, unnamed protein product [Porites evermanni]
| CDS | |||||
| pspe_0.1.m1.68771.m1 | |||||
| Transcript |
| pspe_0.1.m1.68771.m1 |
| Protein |
| pspe_0.1.m1.68771.m1 |
| Uniprot term | Description |
|---|---|
| Q921I9 | Exosome complex component RRP41 OS=Mus musculus OX=10090 GN=Exosc4 PE=1 SV=3 |
| Q7YRA3 | Exosome complex component RRP41 OS=Bos taurus OX=9913 GN=EXOSC4 PE=2 SV=3 |
| Q9NPD3 | Exosome complex component RRP41 OS=Homo sapiens OX=9606 GN=EXOSC4 PE=1 SV=3 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03725 | RNase_PH_C | 3' exoribonuclease family, domain 2 | Domain | Interproscan |
| PF01138 | RNase_PH | 3' exoribonuclease family, domain 1 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027408 | Homologous_superfamily | PNPase/RNase PH domain superfamily | Interproscan |
| IPR015847 | Domain | Exoribonuclease, phosphorolytic domain 2 | Interproscan |
| IPR020568 | Homologous_superfamily | Ribosomal protein uS5 domain 2-type superfamily | Interproscan |
| IPR001247 | Domain | Exoribonuclease, phosphorolytic domain 1 | Interproscan |
| IPR050080 | Family | Ribonuclease PH | Interproscan |
| IPR036345 | Homologous_superfamily | Exoribonuclease, PH domain 2 superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11953 | EXOSOME COMPLEX COMPONENT | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000176 | Cellular Component | nuclear exosome (RNase complex) | Interproscan |
| GO:0000177 | Cellular Component | cytoplasmic exosome (RNase complex) | Interproscan |
| GO:0005730 | Cellular Component | nucleolus | Interproscan |
| GO:0016075 | Biological Process | rRNA catabolic process | Interproscan |
| GO:0034427 | Biological Process | obsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | Interproscan |
| GO:0034475 | Biological Process | U4 snRNA 3'-end processing | Interproscan |
| GO:0071028 | Biological Process | nuclear mRNA surveillance | Interproscan |
| GO:0071051 | Biological Process | poly(A)-dependent snoRNA 3'-end processing | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K11600 | RRP41, EXOSC4, SKI6; exosome complex component RRP41 | - | Messenger RNA biogenesis | ko03019 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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