Gene detail

Detailed information of pspe_0.1.m1.70383.m1 in Pachyseris speciosa

Genomic Location: Sc0001949:67235...71511
NR annotation: CAH3022032.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.70383.m1

ATGGCGCCAGGTTCAAAGGGGAAGACACCGGCAAAGAAGAGAGACGTTGGTGATGacCTCATTCGAGTGCGATTGGATTGTGAGACTACCACAGGACCTGGCATACAGGGAGGAGCCACAGGGACCGTAGTAACCTCTCCCAGACCCGAAGAAGTTGTCCAGGGCTCTACAGAATCCAACACCTTAAATCAGCAACAAGGAGTAGACATGACGGCCTTGACGGGACAAAAAGGAGGAAGTGGGTGCGTGCTATCTGGAACAAAAGTTTTGCATTTCATTGAGCACAAGTACTTTCAGACAGCTGACCTGGTTAATCCAGAGGAGAGGAATGCCTTCCTGAAGTATTTGACAGAGAAAGGAAAATTGCTGTTCACCATTGCTGAGGAAGACGGCTTAATTGTCACCTTGGAATGCAGATCTCTGCTTCTCGTCGATCAACTCTGGGAAGACTACTTCACAGGCCGTTTAAATGAAATGGTGCAGAAGTTCCTTGTGACAGAGGAAATTCTGAAGCCGCTTGGCCTTGTCGACATGAAACTTGTGGTATACATTGAGGAAGAGGAGTACAGAGGATGTCGATCGCATTTTTGGTGTCGTTCGGAAGCTCgcACATCTAAGGAGACATCAAAACGTTATGAGGTGTCTCCTGCACACGCTGAGGGCGATACTCGTGCTGGTGGCATTGAAGTCGTGATACATATTGTCGGCTCTTTTGGTTACCATTTGGCTTTAGCTGCTGATAGAAGCGACTCTATTAAGAAATTGAAGGCGAAAATTGAAGAGACGTTCAAGACTCCACCAGACGAGCAACTTCTCCACCTTAGTGGGGAGATCCTGGATGATGACCACACTCTGAGTGATTACAACATTCTCGATGGATACATGCTTGACGTGACGGTAACTAGCGAAATTGTGATTGAAATCGGCATAAGAACGCTGACCGGTGCCATGATCACCCTGGCAGTGAAACCATTTGATCGGATTGAGGCGGTAAAGAAACAGATTGAACGCTTAGAGGGTATTCCACTACATCAACAACGTCTTGTCTTTGGTGACAGCATTCTTGATGATGAAGAAGTTCTTCGTTTCTGCAGTATTCGCCACAAATCCATCGTAGACATAGCAATGGAAATATTTATCAAATCGCTGTCCGGAAGGAAGATCGTGTTGGCCGTGCTACCAAGTGACACTGTTAGGACGGTGAAGAGGAAAAGAGAGACGGTGGAAGGCTTCCCACTCGGGAAGAAACCTACTTTGGCTTATGATGGCAGACAACTCGATGATGACGCCACTCTTGCTCAGTGCAGTATTCAGACGGGTTCAACCTTATGCGAAGTGGACATTGATGGTACGTTTTTTGTAGATATATTTCACTGTCAGAATAGTACGACTTTACACCTACTGTTGTTTTCGAATCTCTTGCAAAAACGGAACTTATTTTATGGGCCAGACTAGGGCAGTAAGTCCGTGACACTGGTTTTTAAGGTGTTTGATTTCGTACGCTTCGTGTGGCAGTTTTAAATCCTTGGGCCCTTGTTTCATTTTCCTGTAAACCAGTCGGTTTGTTACTATGTTGTGATGAGCTACGCGTGGCTAGTTTCAGGTAATTAGATGGAGAATAATTTTGTTCCACTGTGATTTTTATAGAATACCATTGGTTAGTTATCGTTTCATACCGTCCAAAATTACGAAACCTTTCGTTACGGTACAAGCTTTCTAATTTTTCGAGTAAATTATCTATTACAGACGAGCGTTGCCGTTATAAATGTAAATGCTTTGTTTATAGTGAAAATGCACTTATCTGCTTtagctagttcacaggcattccagtgaaataacttgaaataaataattcaaataaacgtaaCAGGTAACATTCCTTCCCAAGAAAAGAATTTTACTTCCAGTTGATTGATTGTGTGCATGTGAAAGATGGCGCGAAAATTTCATCAGATAGAAGTATTTGGTGGGTTGGCCAAGTTATAAATGTAAATCCTTTGTTTATTGTAAAT

Protein

Uniprot

Gene family

Uniprot term	Description
Q39256	Polyubiquitin 8 OS=Arabidopsis thaliana OX=3702 GN=UBQ8 PE=3 SV=1
D3Z3C6	AN1-type zinc finger protein 4 OS=Mus musculus OX=10090 GN=Zfand4 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	ULD\|UBL\|NEDD8
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR019956	Domain	Ubiquitin domain	Interproscan
IPR050158	Family	Ubiquitin and ubiquitin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10666	UBIQUITIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0019941	Biological Process	modification-dependent protein catabolic process	Interproscan
GO:0031386	Molecular Function	protein tag activity	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan