Gene detail

Detailed information of pspe_0.1.m1.70437.m1 in Pachyseris speciosa

Genomic Location: Sc0001961:57974...75364
NR annotation: CAH3174458.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.70437.m1

CGAGCTCCGGACACACCAGAACCAAGCTTTAAACCTACATTTCCTACGTTGTCCTTGGATCACGCATCCATAAAACCACAGTATGATGTAGTGGTGGTTGGTTCAGGTTATGGCGGCTCTATTGCCGCTAGCCGTTGTGCCAGAGCTGGTCAAGCTGTGTGTGTGCTGGAACGAGGAAAGGAGTGGCGACCTGGTGACTTTCCTGAGTTGTTCACTCACGCCTCCAAGGAAATTCAAGTTCATCCTGGTGGAAAAGAAACTATAGGTGAACCATCCAATTTGTATGAGTTTTATGTCACCGATGACCTGAGTGTTGCCCAGGGGTGTGGTCTTGGAGGAGGCTCCCTCATAAATGCCAACGTTGGCCTTGATGCCCACCCTGAGGTGTTTGATGACCCATTATGGCCAACAGAACTCAAGCAAGACCTTGATAACTTACAAAAGATTGACCGAAAGCATTTCGTGGAGATGATTAAACCAACACCCTATCCTGATCATTACCCCAAACTGGATAAAATGCATCGTATGAAGGATGGGTTCAAAGCCTTCGACATTGAAGATATTCACAAGGAAGCTTATAAAACTCCTCTATACGTAACATTTGAGGACACGCCATCCAATCACGTTGGAGTGCCACAACCTAAGTGCACTGGCTGTGGAAACTGCTGTGGTGGCTGTAATGTTGGTGCTAAGAACACACTGAACATGAATTATTTACCTGATGCCAAGGCCCATGGTGCCGAGATTTTCACAGAGGTAGACTTTGTTGTGGATTACAAAGTGGATTTGTTGGAGATTACAGAAACATGGCTGCATATGGAAGGTAGTGAAGTGACTATTGGAGAGCTCTGTCCGAATGGTTATCGTCTCCTGCACACCCCGCGGCCGGCAGGGCGAGGAGGAGGCGTGGGCCTTCTTTATAAGCAAGGTATTGGCTCTAAAACACGGTTACTTGAGCATTCTTTTACATCGTTTGAATGCATTGATGTTACTTTTGTTGCTCGTAAGAGTTTGAGAGCAATTGTTGTTTACCGTCCCCCAGGGGGTGCGTCAGTTGGAGTTTTTCTGGAGGAATTTTCTGTTCTATTGCAAGAAGCTGTAATATGCCCGGAAGAGCTTTTGATATGCGGGGATTTTAATTTCCATATGGATGACAAGGCCGATTGGAACGCGACACTATTTGGGGGGTTACTGGATTTGTTCAATTTAAAGCAACATGTGTGTGTACCCACCCATGAACGAGGTCATATTTTGGACTTGGTCATTACAAGGAATGAGACTGAGGGTGCCTTAGGTCTAAAGAATGTCACAGTTATGGAACAGTTTATCTCGGATCATAAGGCTGTTtgctttaatttgaatttaCGGAAACCATTAAACGAGAGGAGGACTGTTGTTTCTCGTAAATTAAAGGGATTTGATTTCAATGCTTTCAATGAGATGATTGGTTCATCCGGTTTGTCAGACAGGTGTATCTCGCGAAGTATTGAGTCAGTATCAAAGGAGTATGACGAGGTGTTATGCAGGGCTTTGGACCAGCTGGCACCTAAAAGAACTCGCACAATTGTCATTCGACCTAATGCTCCTTGGTATAATGAGGAAATCGCTATTCAGAAGAGGAGAAGGCGAAGGCTCGAACGTAAATGGCGTTCGACTGGTTTTGAAACTGACAGGGTAAAGTATTTGGAACAGTGCACTGTTGTAAATGATTTGCTTTATAAGGCGAAGGAACAGTATTATTCAGCAGTTATTCTGGAAAATGTCTATGATAGTAAGTTACTTTTTCGTACAGTTGATAAATTACTGCAAAGGAGTATAGACAAAAGATATCCGTCCGCGAACAGTGACCAAGAACTCGCAAATGCCTTTGCTGATTTCTTCAGTGCCAAGATTGTGCGAATTCGTGATGAGTTGCTCTTCACAATGGTAACAGATGAAGACGTCTTAGGGTTGATTAGGGGCTCAGCTATTAAGGCATGCGCACTGGATCCACTTCCAGCGAGTATCATGCGGAAATCCTATTCTAGTCTTATCCCTATTTTTAGAAGGGTGATTAATCTGTCATTGTCATCTGGAGTGCTGCCCAAGGAGCTTAAGgtAGAGGTCATGTCTGTTACTAAGGCACCTAATGGAGGTGACTGGATGGTGAAATACAAGCGTCTCGTCAAAGGTAGTTTCAAAGTTGAGGAGGAGACCATAAGAGCAGCACATGTCATTATTGGTGCAGGCGCAATTGGCTCTACCAAGCTGTTGCTGCGTTCAAGACAGAGAGGGCTCAACGTTTCTGACCAGACAGGAAAGCGATTCTCCACAAACGGAGATGCCCTGGGTTTCAGCTACAATGGAGCAAAAACAGCAAACTCAGTGGGGCTTACCACCAAACACATGACAGAAAGCAAGAAAGTAAAGCCACCAGGACCCTGTATAACCTATGTGATGGACTTCCGCAAAACAACCGACGGAAACTTGAAAAGGGGTTTCGTCATTGAAGATGGAAGCCCACCATCTGTCCTCTCTGGCCCCTACTCTTTTGGTTTGATGGTTGCTGCTAAAGTGATTGGAATTGAAAAGTACTCCTCAGAGGAACTGCTAGAAAAGGCTTGGCAGGAATTGAGAGGTAAAGGGATTGACAACACTCTGTCGTTCCTATGCATGAGCCACGATGATGCGAGTGGGATTATCTCCTACAACCAAGACAATGACAGTGTTGACATCACCTGGGACAGAGTTGGCTATGAGAAGAACTTTCAGATTGTGAACCACGCAATGGAAAAGGCCACCAAAGGCCTGAAAGGGACTTTTGTAAAGAACCCCACATGGACTCATGCTCTTGGCAAAAGTGTTGTCTCAGCTCATCCTCTTGGTGGCTGTCCCATGGGGGAATCTGGACGAACCGCTGTCGTTAACCATGCTGGGCAAGTCTTTGATGGTGATTCTGACAAGATTTTAGAGGGACTGTATGTAGTGGATGGTGCAATTCTTCCGATTGCTGTGGGTGTTAATCCAACTTTGACCATTTCATGCTTAGCTGAGCGCAGTATGCGGCTCCTTGCTGAGAGAGAAGGGTGGCACATTGACTATGACACGTTCAAACCACTTGATAAGACTAGCTTTGTGAAAGAAAAGCCAGGAATTCGCTTCACAGAGAAGATGGTCGGGACATATGAACCATCCAACAACAATGCGAAGCAAACACCATGTGAATTCACACTCACCATCGATTCTAATGACGTTGAGCGCATGCTCAACTGTGACCCATCGCACTCAGCAACGATTTCAGGAACAGTGACGTGTCTTGCATTATCATCTGCTCCACTGTCAGTTTCTGAAGGCCACTTTCAGCTGTTCAGTACCAGTAAAGAATATGTGGACACCAAGGAAATGATCTACAAGATGACTCTGACAGGGGACTTTGGCAGAAAGTTTTACTTTGAAGGTGTGAAATACGTCCACAAGGACCACTTTGGGGAAACAGGTTTGAAGGATACTACAACTTTGTTTGTTAAAATCTTTCAACACAGCCATACAGAGCCCTTGGGTAAAGCCACACTCTACATAACCGCACCCAACTTTGCGAAGCAACTTGCGACAATGGAGATCACAAACACAAACAGCAAACTTGAGAAGTTGAAGTGGACGGCACGTTTTAGCGAATTCTTTGCCAAAACTATCTGGAATGTTTATGGCCCTACTTCATCCTTTGACGTATATTTCAACCCTGATGCGCCGCCCAGGAAGAAAAGGCCCCTGAATCTTCACGGCTGCACCCCTGAGGTCTACAAATGCCCCACTGAGGACAAGtttgaaATAGCCTTAACTCGCTACCATGGCGGTACAAAGGGGCCAGTTGTACTGTTCCATGGTGTTGGAGTCAGCAGCGGAATGTTCAGCCTGGACACCATTGACACAAATCTGGTGGAATACCTTGTGCAACAC

Transcript

pspe_0.1.m1.70437.m1

Protein

Uniprot

Uniprot term	Description
A0A4D6G3C8	Cholesterol oxidase OS=Acinetobacter baumannii OX=470 GN=choxAB PE=1 SV=1
P9WMV8	Cholesterol oxidase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=choD PE=3 SV=1
P9WMV9	Cholesterol oxidase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=choD PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00890	FAD_binding_2	FAD binding domain	Family	Interproscan
PF05199	GMC_oxred_C	GMC oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052542	Family	Cholesterol Oxidase Enzyme	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR029058	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR003953	Domain	FAD-dependent oxidoreductase 2, FAD binding domain	Interproscan
IPR007867	Domain	Glucose-methanol-choline oxidoreductase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47470	CHOLESTEROL OXIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0016614	Molecular Function	oxidoreductase activity, acting on CH-OH group of donors	Interproscan