Gene detail

Detailed information of pspe_0.1.m1.70444.m1 in Pachyseris speciosa

Genomic Location: Sc0001963:38722...48263
NR annotation: CAB3983427.1, Hypothetical predicted protein [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.70444.m1

ATGAAGATATGTGCTAAATCTTCTGGTTCGGTCTGGAATGCACTCACAAGAATCTCTGGTCCTGTGAACACGCCGGTACGTGTTGCTGTAACAAGCGTCAAGATTAAGAGGTGCCAATGCACTTGCGCATATTATTCCAACAGCACCGCAACATTCCATTGCTTACTTGAAGGGGACTTGGTGTTTAAATTAAATCCCGGTCCCTCAGGACGACCAATTCCGACAATAGTAGGGGGTGGCACGGGCTTGCTATACCGCAATGACTTGCGTGTCAAAAAAGTGGAATCTGGTGAGGAAAATTCGTTTGAATTCTCTGAGTGGATCATCAGTTCAATCGGACATGATATAAGGCTTTTTATCATTTATCGACCGCCCTACTCGGATGAACACCAAGTTCCAACTAGTGTGTTTTTTACTGAATTTTCTGAATATCTGGAATCTGCAGTACTTTCCAAAGAGAATTTGTTGATATCAGGGGACTTTAACATACATGTCGATAATATCCACGACTCCGATGCAATAAAATTTTCAGATCTTCTGGAATCTTTCGGTCTCAAACAACATGTGACTGGACCTACGCACAAAGATGGCCACACCTTAGATCTCATTGTCACGCGATGCTCTGATTGTATCTTATCCGCGCCACCTAAAGTTGATTGCTTTCTATCTGACCATGCATCTGTATGTTGCAAGCTGGCCTCGCAAAGACCCCCACTGCTAGATAAGGTGATAACATTCAGGAAATACAAGGGTATTGACTTGGAATCCTTTAAGCGGGATTTAGACTCATCTTCACTTTGTCAGAGTACACCAAGTGTAATATCTGGGGAGGGGCTTGATGAGCTAGCGCGTGATTATAATAACACTTTGTCTGCACTAGTCGATCGCCACGCCCCACTGAAGTCCAAACGCGTAAGGTCACGCCCTTCGGTTCCATGGTACACCGCTGAGATCAACGCTGCTAAGAAACTCAGGAGAAAAGCTGAAAGGCGCTGGCGGAGGACTGGGCTACACGAGgattttgttgctttcaaaGCACAAAGGAATCGCGTAACGTATTTGATGAACGTAGCAAGAAAGGAGTTCTACACTGACTTCATCGCAGAAAATAGTTCAGATCAAGGAAAGCTCTTTAGAGCGGCCAAGAAGTTACTAGCTAAAAAGGAAGTTCCATCATTtcctgaatatgtgaataacaGTGTGCTAGTGAATGACATCGGTCGATACTTTATTCGGAAGATTAATACCATCCGATCAAGCATTGATGCTGCATCAGATCCTAGTGTTGGAGCTCTACTGCCAGACGACCCGGTAGTTGGTCCCAATAAACAACTCTGGGAATTTCAGTCTCTCGATGAAGGCCAGGTTTCTGAGCTTATCCAAAAGTGCAGTAAGAAATCTTGTCCCAGTGATCCTGCGCCAACTTCACTAGTTGTATCATGTTTGGACGAACTTCTCCCAGTTATCACGTGCTTGATTAACggctccatgaaaattgggtacTTTCCCTGTGATTGGAGAGAAGGACTTGTTACTCCTTTGCTTAAGTTAGCTGGTCTACCCTCTGACTTCAAGAATTTACGTCCCATCAGCAACCTACAGTGGCAACGTGTTTCCTTTAATCAAGAAGTATCACAGAGATTCGATCTGACGTGcggcgttcctcaagggtcctgcCTAGGCCCGCTGCTTTTCACCATCTACGCAAGCAAGTTTTTTGAGATTATTAAGGAATACCTGCCACAAGCACACGCGTATGCGGACGATACACAACTGTATCTGTCGTTTAAGGCTGATTCGTCAACTGCGCAGAATGATGCTATGAAGGCCATGGAGAACTGTATTACCGCCATCAGAGCTTGGATGATAGAGGATAAACTACGTCTTAATGACAGCAAGACCGAGTTTATGATAGTCGGAACTAGACAGCAATTAGCTAAAGTAaacattgatcagttatgcGTGGGTGAAATATGTAAGGCTGCTTCATTTCACCTCTACAATATCAGGCGCATACGAAAATATCTTACAAGTGAATCTACGCATTGCTTAGTTAGGGCCACTGTTATCGGCCgtattgattattgtaacagcttaCTATTCAAGATTCCAGCTCACTTCCCAAAAAAGTGCGGCAATGCCGCAATGACGCAGATGGGGGTATGTATCAATGCTTATGCTGACGATGAACAAATTTATGCCTcggataaagatccagtgaagtTAGAAATGAGACTTCAATGCCAACTTCTCGAAGCTGACCACTGGTTTGGTATGAATGGAGTGAACATTGACAACAATCTGCAGTTCAACAGCCatATACACTTCCGCAAACATGTGGAAGAAACTAACAGAGGACCTGAG

Transcript

pspe_0.1.m1.70444.m1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan