Gene detail

Detailed information of pspe_0.1.m1.70504.m1 in Pachyseris speciosa

Genomic Location: Sc0001975:40155...50873
NR annotation: KAJ7323705.1, Hemicentin-1 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.70504.m1

AGTGCACCACGTTTCAATGCGACTCCATCTTACTTTGTCTACGTGCCTGACAGTGCCAGTTCCTTTACACTTTCTTGGGACTACGACGATGATGGAGAAACGGTCAAATACGTAGAATTAAGCTCATACCTCGTCAAACCGCAAGTGAGATTCTCCGGCGAGGTCACTGTAAATGAAGGAAGCGATGCATTTTTGTTCTGCAAAGGAAACGCCTACCCTACCCCTGTCAAATACAGCTGGTTTGTAGGAGGAAAACAGATCAAAAGTGATACCAACGGAAATTTTGTTGTCAACGATTTAGAAGATGGCTGGAGCAGACTGACAGTTAGGCGAATTTCAACGAACGGCGGATATAATGGAACATATGGAACATATCAGCGATATGGCCGTTCTGGAACCAATGATCTGGGAACTGGAGAAATAAGATATGTTCAACTCACCGTAAATTATGCTCCTCGGCGTGTCTTTATCAATTCTTATCCGCACCCAGCAGTCGTAGCTCTGGATCAGAGAGTATCACTTGACTGTTATGCTGATGGATTACCACGTGTATCCTATGATTGGAAACTAAATGGACATGATTTGAAAAGAGGGAATCAGTGGAGTAACAGATTGATGATAACAAACCCAAAAGTCAAAGATGTAGGCAATTACTCATGTGTGGCAAGGAACATACTTGGCTCCAGAGAAAGTAAACCTGTTGTGCCTACAGTTACGACTTTTACGACTGGAACTCTGCATAACTCTGTTGTGCAAGGTACGACTGTGACACTTACATGCAGTGCAGATGGATACCCGGCTCCCACATATATCATCACACGGGGTGTGACGTCACTGGTGCAACAGAGCAGAACTGGAAAGCACGTGATCAGCAACGTACAGTTCAGTGTCGAGGAAGAGTCATTCTTCTCTTTGCCATCAAACAAAGTTGGAGGTGGGCCGACAAAAGAGCTTAAGATGTGTACAGCTCCTCCAACAGTTTTCGCCCAAACACTGCCAAGTGCCAAAGAAATAAGAAACGAAGGTCAACCTATCAGCTATTCATGCACAGCTGAGGCAAAACCTGCGGCCGAAATCGTGTGGGAGCTGAATGGAAAGACGCTGGTCAACCTTCCACCCTACAGTATTTCAGCAGCAGTAATACCAATTCCACGCTCAGAACTGTTCAGGACGATTAGATATCTTATCATCGATAAACTGTCTACTCGAGAAACTGGGATACTTTCCTGTATTGCCATCAATGATGTTGGTAAAGTCAACCAGCACACTGAACTTGAAGATTATCCACTGGTCCAAACAACAAGTTTACTGTTGCTGGTCCGTGTTGAACTTACTTTTATAGTGTTGATGTTGGACACGCGAAATAAAGCACTGGAAATGGCTCAAGGAGTGGATTTTAAACCTGATCAGGACGATAAACCTTGACATGGAGATGAttgttcaaaacaaattaatcaCACAAGTACCACAATGCGTACCTCCATGCATGCTCGCCTTTATCTGATAGCGTTGACTGGATGTTCTACCTAACGCTACAACCTTGGACAAAACTTACGTGAAAATTGAGCTTTAAAGCATTTCTACGGGCAAGAAATAACCAACTGAGTTTAAGCGCCTCCATTCCCCGAATCAATATTAGTTGTTTGCGCATtctaaaagattttttcattagcAATGGAAGCTTCAAAGTCAACATTGATTGGCGAATGGGGTGAAGGAAAAGTTACTTTATTAATATTGTTGAAGTACACATCGTGGAAAAGGATTTTCGGACTTCAAATGGCCCGTGTTCTCAAATAGCTTTGTCCAAGATTGCACTTAAATACTTAAGCCATGCAACAGCTAATTTAAAAGTCTCGCTGTGGGAGCATATAAGAATAAAAAAAGCATCATGCTTATCACGCGCCAAAAAATATTGTCGTCGTCTTTTTGTGTCTGTGTGCACGTTCGTTAATTTACCCTCAACATCAGGTTTACAGCTTACAACATAACCATCGGTAGAGGTTTCTGTAAACTAAGCATTTTGTATTATTAAAGAGGGTCCTCTATACTtttttcgtgaaacgtgatcgAGCCTATTTTTTACTCGTGAAACGcgatttaaatttttatttattcgtgattcgtgattgGTCGTGTCAAGACCATTTTCACGAGAGCGTGAAAGCggtttttgaattaagcgtgacacgttaacgaagactttaattaaacgtgattcgtgagcgatcatgttttgcgtgaattaatttaaagttattttagtgttctgACTCGTAAATCAGCTTCCGGCAATCTCTTTAGTCCCGCGATGACCTTTGACCTCCG

Protein

Uniprot

Uniprot term	Description
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0043005	Cellular Component	neuron projection	Interproscan