Detailed information of pspe_0.1.m1.70652.m1 in Pachyseris speciosa

Genomic Location: Sc0002006:26494...49201
NR annotation: XP_029193178.2, LOW QUALITY PROTEIN: cartilage oligomeric matrix protein-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8JHW2Thrombospondin-3a OS=Danio rerio OX=7955 GN=thbs3a PE=2 SV=2
P49746Thrombospondin-3 OS=Homo sapiens OX=9606 GN=THBS3 PE=1 SV=1
Q9Z1T2Thrombospondin-4 OS=Mus musculus OX=10090 GN=Thbs4 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11598COMPCartilage oligomeric matrix proteinFamilyInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF02412TSP_3Thrombospondin type 3 repeatDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR024665DomainThrombospondin/cartilage oligomeric matrix protein, coiled-coil domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR028974Homologous_superfamilyTSP type-3 repeatInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR003367RepeatThrombospondin, type 3-like repeatInterproscan
IPR017897RepeatThrombospondin, type 3 repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10199THROMBOSPONDINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0007155Biological Processcell adhesionInterproscan

TOP