Gene detail

Detailed information of pspe_0.1.m1.70718.m1 in Pachyseris speciosa

Genomic Location: Sc0002019:8433...22103
NR annotation: CAH3029680.1, unnamed protein product, partial [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.70718.m1

atgGCAGGAGTGTGGTGTAAAGTGTTTTATAGCAACTGTTACAGAACCGCAAAACTTCTGTATAGGTCAAAATTATATGGCCATATTGAGAAGCTTACACAGGCAGCCCATGCCAGTTCTATGCCAAGCAAAAATGTCAAGATGACCGTTAGTGACTTCTATGAAATATATGGAGATGATGCTGTAAAAGTTTCAGAGAAGACATCTCTACGAGTTTCCAGGAATCCCAATGTGCAGAAGTTGATGGCTGGGTTTCCTGTGAGATCTTTAGACAGCTGGCTTACAACACTTGTTCAACAAGGTTTTCAACTGGCAATCTGTCCTCAGTGCCTGGGCAAGACACCAGCCAACTCCAGATTAATCCATCGTGAAGTGGTGCGACTAGTAACACCAGGAACTCTGCTTGAACCACTTAAACCGGATGCTAACTACCTCATGAGTATTGCGCGGGGTCCTGACTCTTCTCTTGGGCTTGCCTGGCTTGACCTGTCAACTGGAGAGTTCCATCTGGGCGTGTCATCCCTGGAGAACTTGGAAGAGGACTTGTCAAGGGTGAACCCTGCAGAGGTTTTAATGGCTGAAGACCATCTGGAGGATTCCAAAGTTAAACATAATCCTAAAACGGGGATGAccatgaaaagatctcctctggAGAGGGTCAAGGATTTTCACCTCACCCTTGTGCTGTCAGATTGGTTCAATGTCGACACTGTAGAACAAACCAACTCTGCACCAGAACTTTGCACGTCTGTGGTCTCATCACAATTTTCTTCATTAGAAATAGCTGCGGGTGCTGCTTTACTGAAATTTGTGTCATACACTCAAAGAGACGTTGCTCCGTTGGTTAGCCAACCTTTAAAGTTTTCACATCAAACCCACATGGCCATAGACTCAAATACAAGAAGAGCTTTGGAGCTTACAGAGCCCTTGATGGGCACGGACAAAAAAGCTACATTGTTTGGAGTCATGAATAACACTGTGACCGCATCAGGACAAAGATTGCTCAGCTCCCGCCTGTGTGCACCTTCCACAGAGGTGGATGTTATCCAAAAGAGGCTTGATGCTGTTGACTTCTTTTGTATCAACAGACCACTTGCTGAAGAACTACAGAAAAACTTGAAGCTCTGTCCTGATATTGAGCGTAAAATGCAAAGGATAAACTTTTCTCTCCTCGCCTCTTTCAGAattGCTACTGGAGTTGCCAACCTAAGCGATCTTCGTGCCATTCATGGGGCCTTAGTAATCTACAAGAACATTCTCTTGCTGCTTCACGACAGCTTCTATGACAGTAATCTTGAATCTATAGATCACTTGCTAATGGAGGAGTTCAGCCAGCTGGACAGCTTGTATGCAGAGTTGGACACTGCTGTAGGTCAGCTTGTATCAGAGTACAGTGTGATGGAAGGGTATTCAAATGCAGCTGATGAAATCAAGGATAGACTTGATGAAAATACAACACAAGTTGAGGAATTAAGGGATGTCTACAGAGAGACACTGAAAATCCCCCGACTTGTAATCAACACCCACAAGTCATTTATAAGAGTCGTGGAAATCCCTGCAACTACTAAGATGGCAGTTCTTGACGGAAATCAGGAGTTTGTATTCTTGGAGAAAACGTCAGACAAAGCTCGCTACAGCACCCTGAAACTACAGGAGCTGAACGCTAAATTGAAAGCTTTACAAGATCAACATGATCAAGttcagagggcgctgtctgaagatCTTTGCAATCAGGTAACCTCGCATGCAGAGAGCCTCAAACAACTTGCTGTCTCTATGGCCGAGTTAGACGTGGCTTCCTCGCTCGCTCTGCTAGCTTTACAGAGAGTTTACGTAAAACCAGTAATCCAACGCCAAAAGGAGTTCGAGTTGAAAGGCGGTCGGCATCCAGTCGTAGACATGCTGCAACCAAACAGCTTTGTTTGTAACGATTGTGATCTGGgcgaaaaaaatgtttggattgTAACAGGACCAAATATGGGGGGTAAGAGCACTTTTCTTCGTCAAAATGCTCTGATCGCCATTCTCGCTCAAGCTGGCTCATTCGAGTTGTGGACCGAGTCTTTGCGCGGATTGGAGCGAGCGGATAATCTTGTACAGTATCAATCAACGTTCATGTCAGAGATGTTAGAGACAGCATTCATTCTCGCTCAGGCCACAGAGAAGTCGCCTGTCGTTGTGGACGAAATAGGCTGTGGGACCTCCATGCTGGATGGATTGTCAATAGCTTGGGCAGTGATCGAACATCTACACAGTGTTATAAACTGCAGAACATTAGCCTCCACGCATTACTATCAGCTGGCTAAATTTGCTGATATTCTGCCCCGTGTGGACTGCTACCACCATGGATGTGATCAGAAATCTTTTGGAATTGACGCGGCCAAGCTTGCAGGAATTCCTTCACAGGTTGAAAATCGTGCCAGGGAGCTTCTCAGAAACTTGGAAAAAACGGACAACATTCTTGAAGACACTTTGGAGAACGATAAACTATTGAACAGAAAGATTGAAAAATCCATAAAGGATTCAAAAACTTCTGAAACCTCTTCAGAAGTCGAAATGCCTGCGAATACTCCACAAAATGTTCAAGTTGAAACAGAACTCAGTAAAGCACTTTTATTACTGAATCCAGAGTCCATCACACCTCTACAGGCCTTAGAGATTATTTATGACTTACAAAAGAAAGCGCAGAAGAGAAGCACATGA

Transcript

pspe_0.1.m1.70718.m1

Protein

Uniprot

Uniprot term	Description
Q2WAN4	DNA mismatch repair protein MutS OS=Paramagnetospirillum magneticum (strain ATCC 700264 / AMB-1) OX=342108 GN=mutS PE=3 SV=2
A9M792	DNA mismatch repair protein MutS OS=Brucella canis (strain ATCC 23365 / NCTC 10854 / RM-666) OX=483179 GN=mutS PE=3 SV=1
Q8G310	DNA mismatch repair protein MutS OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=mutS PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05190	MutS_IV	MutS family domain IV	Domain	Interproscan
PF05188	MutS_II	MutS domain II	Domain	Interproscan
PF01624	MutS_I	MutS domain I	Domain	Interproscan
PF00488	MutS_V	MutS domain V	Domain	Interproscan
PF05192	MutS_III	MutS domain III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036187	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR007696	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR016151	Homologous_superfamily	DNA mismatch repair protein MutS, N-terminal	Interproscan
IPR017261	Family	DNA mismatch repair protein MutS/MSH	Interproscan
IPR007861	Domain	DNA mismatch repair protein MutS, clamp	Interproscan
IPR007860	Domain	DNA mismatch repair protein MutS, connector domain	Interproscan
IPR007695	Domain	DNA mismatch repair protein MutS-like, N-terminal	Interproscan
IPR000432	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR036678	Homologous_superfamily	MutS, connector domain superfamily	Interproscan
IPR045076	Family	DNA mismatch repair MutS family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0043504	Biological Process	mitochondrial DNA repair	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan