Gene detail

Detailed information of pspe_0.1.m1.71104.m1 in Pachyseris speciosa

Genomic Location: Sc0002118:32062...35887
NR annotation: CAB3978349.1, Hypothetical predicted protein [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.71104.m1

ATGGATGTTGAACTAAATCCTGGACCAACTTCTTCGTCTTCAAGACCCACATGGAAGCGGCCCTATCGTGGATGCCGGAGTGGAAGAACGGTCAGGGCGCGTGAAGCAACGAAGGTTTTTAATATTCAAGCCGCCATGACACCTCGTCGTCACCAATTTGCATTTCACTCAGGACGCAATGACAACAATCTTGTTCGTATTCCGCTGATATCACCTCGGTCATGCTGTCGTCCACCACTACGTTTCGGTGTTTGGAATGCTCGCTCACTGAAAACCAAAGTATCGTCGCTATGTGATCTTATGTTATCTCATCGTCTTGACCTCTTATCTGTGACTGAATCGTGGCTTACTGCGAACGATAGCATCACCATCGCCGACCTTACGAATTCACTTAATGATTACGCTGTTTATCACCTGCCAAGAACCACTTGTAGAGGAGGTGGACTTGCTGTTATCGCACGGAAAGGGCTCCAAGTTACGCGAAATGAAGGCTgtattttttctactttcgAACATTTTGATTTAACTGTCACCTCTGGTAATAAGGTTTTTCGCCTTGTGACAGTATATCGGCCTCCACCGTCCAAGAAAAATGGCTTTACAGTAGAAAAGTTTTTCTCAGAATTCTCTGCGTTCTTAGAGGAGTTGACTGTTATATCCTATCAATTTCTTCTTTGTGGTGATTTCAACTTTCATGTTGATGAcaatgcaaatgcaaacgctAAACAATTCCACGATCTTCTTTTTTCTGCAGATCTGAAACAGCATGTTAATGGCCCTACCCATCGTTTGGGTCATACTTTGGATCTTCTCATCACTCGCGAGATGGATACTCTAATTTCTCATACAAGAATTTTACCAGATCTTCTCTCTGACCATCTAGCGGTTGTGTGCTTCATAAATTTACCGCGGCCTCCTGCCACTCGTATAACTGTTACGCGTCGGAAGACTCGGGACATCGATCTTGATGCTTTTCGGAAGGACATCTCCCGTGCCTTCTCTAAGGAACCAGTTGATGACTTGGACGACAAGATAACTGCGTTTGATAACACATTGCGTCTTCTACTTGACAAGTACGCCCCAGAACAAACTAGGAATATAACCCTTAGGCCACACGCGCCTTGGTTCTCAGATGATCTTCGCGAATTAAAACGTGTTAAAAGGcgctgtgaaagaaaattccaatccactaagttatcagtcgacaagcaaatTTACTATCAAGCCTGCCGCAATTATAATCGCTTGTTGGAGGTTTCGAAAACCAATTACTTGAAGGACAAATTTAGTACGTCTAATATGAAGCAGCTTTTCAAGCTCGTTGATGGTATGTTCAGCGTAAAGTCTTCTCCAACTCTACCGACACATGACTCTCTTGAACATTTGGTTGAGAGTTTTGGCGACTTCTTCGAATCTAAAATCATCAATATCAGACGTTCTCTCTCTCAACAACCCTCCTCGCGGCCTAAATGTGTGACTGATGTATCGTGCTCTACCTCCTTCAGTCAGTTTGATCACactgagataattcatttctcttcgcgtttttcacctgctgagccgattgcttcgattaaagtcggtgatcattacgttcagcctactagtgttatcaaagaccttggagtcacgcttgattcacaccttacctttgttccccatgtcaacaatacctgtcgcgctctttcgcGTGCTATATTCTCTCCGATCCTCTTTTGTATCTACTTGAGCGACCTTCCAACTATAAACCGGAGATGTCACCTTGAATCATATGTggacgattccaagctccttttgtcttttccactAGCCGACATTGATTCCGCCAAAACTACTATTGAGCAAGACCTCCATCGTGTAGCTAAATGGTGCTCACTTAACGACCTCCTCATTAATCCTATGAAGACCAAACTACTATTAGTTGGTACCCGTCAGATGACCAATAATCTTCCCACCGACTTTAAATTAGATTTTCTCGGCAAGCAGATTACACCTTCTTCAAGCGGCAAAGATTTGGGTGTTGTCATTGATTCACACCTGACCTATGACGATCACATCGattccattgtttcttcctgcatgggaaaactttgccaaattagtagagttaaggatagctttgacaaagatacattacgtttgatg

Transcript

pspe_0.1.m1.71104.m1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14284	NXF, TAP, MEX67; nuclear RNA export factor	-	Ribosome biogenesis	ko03009	deepkoala