Gene detail

Detailed information of pspe_0.1.m1.71624.m1 in Pachyseris speciosa

Genomic Location: Sc0002260:16951...33862
NR annotation: CAH3019835.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.71624.m1

TTTCCCGCGTCATGGATGCTATAAATACTCGGGGATTCCCCAGCATGTCGCACATTTCAATAACAACCACGACAATTGCGCGTTAATTTTGTATTGAATTACTGACGTTGTACAGTGGCTTATATTCCTTCAAAGACGTTTCTTTTCCCGCTTCAAATAGGAGCGACTGTAAGCGCTTCTTGACTCAACCGTCGGTCGAAAACCGATGAAGCTACAAATTTACATTTTAAGCACGACTGCCTTTGAACACGACGATAGATGGCGAATGATCCGACTAAATCACCGCATAAGAACATAGCTGAACTTCAGCAAGAAATCCAGCGTCTTTCGCTTGAGAAGGGTCAGTATTTGGACGAGCTGAATAATGGCGAGACGTTGAAAATGCAGCTGAGAGAGACTCGGAGAGACGCCAGGCATTTGTCTAAACAAAAGGAGCGATTGCAAGTGATGGCGGATATATCGAAGGACGAGaaTTCAGAACAAGTAACTTACACTCCTCAAGCGGAAAGTCAAGTTTCTCTCGAAGAAGACCTTCCAACGTCCGTTAAACCTTTACCTGAGCTTCAACCGCCGCAAGCCTTTGTTTCAGTTTCAAGAGAAGAAAGTCTGTCATTTAATTCGGGAGAAAATTTTTCCCCACCTCCACCTCCTCACGGTTTCTCAATGAACGGCGAGATTTCCCCAACCCTCCCTGCTGCTCCTTTTACCAAAGTCCCCAGGGCACCCGAGTGGGGAGTGCGAGACGCCAACGCTTTGCAGATCGAAAATCGGAACTTAATAACCATCAAGAGAAAGCAGGAAGAGCAGATACATAAACTGGTACAGGAAATTGCGACGTTAGAAGCAAGGGTTAAAGAACTTGAGAGCATTGCACAGCGCCTTGAAGCCGAAAATCAGCGGCTTTCGCTGCAAGTGGGCCAAGCGCACATTGGACAGGTCCCGAACTACAACGTACGACTGCACGAGGAAATAGAACTCCTGAGGGCACAGTTAAAAGTCTATGAGGATGATTTCAAGAAAGAGAGATCAGAGAGGGAGAATATGATAACAAAGAACGAACGCCTCAAGAGGGAGTTACGCGAGTCACAGGCAACTGTTGCTGGTCTGCAAAGGCAGCTAAAACAGGCCCTTGCAGGAGAGGGTGGTTATGGTGAACGACGTGACCTAACACGTGCACCAATCCTGAACGAGCCCTACTACAGCACCTACCCGGCGAGGTACCCGCTGGATTACGGGATGGCACGCTCGTACTCGGGAGGTTACATTGGACCTGGTGCTAGCAGTGATGTTCTTCGACGTGGACGAACACCATACGTGAGAAAGGCATTCCTGTCACCAGACGTGACAGCTGTCATTGATCATGACGTCACTGATGGATCAACCAGGGGCGCACCAAAAAGTATCTAACGCTGAAGTGTGTCAGTACAAGAGTTGGTTCCAGTTTTCTTCAGCATTATTGCGCTAATTAGCCAGTTTAAACTAGGCGCTGCACATTTGATCATAATGTCATGTCTCATTTGAGCAGATGTATTGATTTTACCATCGATTCATGTTGAGAAAAGGGGGAAGGTTTTAAGAAGAAACCGTACAAGAGACGTGAGATTGAGTGGAGGGTGTATGCTTAGAATCAAGGTGTTTATAATTAATGTTGCCATTGTATCTTCAAGTTGGATAGTTATGTTTTATAGCAAATATCATAAGAATAATTTTCGGGATTTACCTAAAATGTAAGACTCTTTTGGGGATATAGAAATCTTTATAATATGTAACGAGTTTCCGTTTAGAATCCTAAATAATCCTCACgtagaaatgtttgttttccttaAAGTCCacgtttaataataataataaactttattttaaaacacaaTGGCAATAGAATTAATGTGTTtttacaaatataataaaaatgcatatataataagataataaaatctaaacattacTATAGTCTTAGAGCTCTTGGGACAAAAGATTGCTGGTGTCTTACTGTACGTGATAAGGGCACTTGATTACATTTTTTGCGTCTATAAGATTATAGCTATGATCAGATTGTTTAAATAAGTGTTTAAAGGTATCGCTCCTCATCATCCGTTCCAGCTCATTTTTGGTAAGATTGCTTCTTCTACTCGCTAGTGTTTCGAGGGCATCTTTTGGAAGGCCAAGGATCTTTAAACAACGGTCCTGTACTCTTTGAAGCTCCAGGGAAAGGTAATCAGGAATACCTCCCCAGATAGGACACGCATACTCAAGCAAGGGTCTAATTTTTGTTGTGTAGGTCGTGAACTGAATCCTATTGTAACTATAGTAAAATAGATAAGCGTCTATTTTTTAGTTTTGGTCCAGTAAAAAGCTACTAGCAAGCCTTTTGGTTGGCTATATACCTTTTGCCGTTGATTAAACTTGTGTTAATCACACTGAGTGTGGATTCGGGTTTTGGTAGTCTTAAGCAATCAATGCATTGGTTGCTAAGAATGCGAGCCATTTACAGATTTTTAGATAAGCCGTACAACTCCGTAGGCTTTGGTAGTgatttattacccgggctgcgcgcgtctcgcgcggcgcccgggtctaagattaccgacggttctttttcgcctcttgtttgcaAGGTGTTTTGAAGTGCCATGGACTCCTGGCCATGGACTCCTTCACCAGCTACAAACTAACGTGGCTCATCGTTGActgtaaacaagaggctacaattagcctaaacccgggcttgcaaaaaacagtattgtatccctaacttagtgctaaacaaaagaataaagggaagtctgtctttcttacatcggacgcattgtgtttagcttgtgttggagtctatttctttagacccctatcaacatatattcctctaaaatacagctcaaccattgagcacaataattataacacttgtaaaaaatatttctaaaagaacaagaaaaagagaaacagaaaaaataaagcccgtgatatatacca

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UBAN

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16516	CC2-LZ	Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032419	Domain	NF-kappa-B essential modulator NEMO, CC2-LZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31882	TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0071222	Biological Process	cellular response to lipopolysaccharide	Interproscan