Detailed information of pspe_0.1.m1.7337.m1 in Pachyseris speciosa

Genomic Location: Sc0000014:1746234...1807071
NR annotation: XP_020632435.1, coadhesin-like isoform X1 [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
B3EWZ3Coadhesin (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q96RW7Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
Q13591Semaphorin-5A OS=Homo sapiens OX=9606 GN=SEMA5A PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01410COLFIFibrillar collagen C-terminal domainFamilyInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR000885DomainFibrillar collagen, C-terminalInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR050149FamilyCollagen superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0030020Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

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