Gene detail

Detailed information of pspe_0.1.m1.7817.m1 in Pachyseris speciosa

Genomic Location: Sc0000017:1372802...1394720
NR annotation: XP_029190904.2, neurogenic locus Notch protein-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.7817.m1

ATTTCATTGACATTTGCCGGGACTTGTATTCCATACGCcatgaaaatgttgaattttcGGTGACAATTTGTCTAAACGATAATGATGTTTTGTCTACAGACGCGGTCACTTTTGACGATGGTGGTTGTCTTGTGTAGCAGTTTGAGAGCTTCTGGATTTAGAGATAAATCGAGAAATTCTAACGAGCATCCGAATCTCAAGAGGACGCTTAAGAGTAAAGCTACCCCGACTTCGTTTAAAAACTTCTCCGCATCATCTTGGACGCGTAAGAAGAGTGACTTAAGTTTTAATAATCACCCGACAAAGCGACAAATGCAGTCGCCAGATGTCTACGAATCCTTCTTTGATAGCTTTAAAGAACCCACAGAAGTATTCGAGGATGAAGCGCCATTCTCCAGACAGGTCATCTTTGGGCCAAGGCTGCCTCGTCCATATCCATTTCAGCCACTACATGTTCACTTAGCGTCTCCATTCGACTCTTTGAGGTTTTTTCCAAGGCCTATTCACGTGCATAGTTACAGAGGGGTCCCTGTGGCGGTTCGAGTGCCAAAATATGAACATGTACCAGAGCCTTATTATGTTCCTTACAAACCCAATCCAGACTATACTGTGATGCACGTTCATGTCGATGATCCAGCCAAGTTGTATTGCTCATCAAGTCCTTGTCAAAACGGAGGGGTTTGCGAAGAAATAGAAAACAACTATCAGTGTCAGTGTAAGAGTGGATATCTTGGCTACAATTGTGAAGAAAAGAATGCTTGCAAACCAAATCCTTGTAGGAATGACGGTCAGTGCGTGGAGACTTCAAACAATTACAGATGTTACTGTCGACCTGGATTCATTGGCAACAACTGTGAAGATTTCGATTACTGTGATCCAAGTCCTTGCCAGCACGGAGGCACATGTCAACAGAGGCACGGATTTCACGAATGCATTTGTCACGAGGAATACAAAGGAAAGCTCTGCGAACAAAAGAGAGTCTGTTTATCGAATCCTTGTAAAAATGGCGGGGAGTGTGTTGAAGATGATCCACAGTTCCCCTGTATTTGTCCAAAAGGATACAGCCCTCCACATTGCAAAGTTCATGTTTGTGACTCGGACCCATGTCTAAATGGTGGGAAATGCGTCCCAAGGAAAGCAGGAAATTACTGGACACATCACTGCATATGCTCGCTGCTTTACAAAGGCGAAAAGTGTGAACTTCCCAACCCGTGTGTAACAAATCCGTGTTTACACGGAGGAACATGTATCGACTCTTACAGCAAGTATAAAGGTTTCCCCAAAGACTGGGACGTGGGCTATCTGCATTACTACTGCGCATGTCCACCGGAATATTCAGGACAAAAATGTGAAGCCATCGCGGATCCCTGCTCTCCAAGCCCATGTCAAAACAATGGAACTTGCACTAGAGGCCCAGATGAAAGCTTTGATTGCACATGCCCTAAAGGATATTATCCACCCCTTTGTTCAAGAGGGAATCCGTGCGATAGCAGTCCATGTCAAAATGGTGGCAAGTGCTCCCCAAGTAAAGACATGCTGTCTTTTAATTGTCAATGCCCTGAGCAATGCTCTGGGAATCTCTGTCAAAACTGCAATGGAGACAGATGTATGGATTGTGATGTGTACGCTAATTGCTTCAGAGGCCGTTGTAAATGTCGGCCTGGTTACAGAGGAAGTGGACTAAAAGGAGATTGTAAACAAGATGGACTCTAGGAGAAGACGACCAAAGATACCAAAAGCAATACACACTTGAGCTGTGACCTACAACGTCTGGATCTTGGTTGCCTTCTTGTTTGCAAAATTCTGCTAGATTTATATCTTCAAAGTTGTAATACATGTTTTATAGTAGTTATGACCACCAAAAATCAACCTTTGAAGACAAAAGCAAGTCTTTGTGTACGTACGTCGCCAAGAAGCAAATACCGGCTCGACTCTAAGACAGTAATTTTCCAGTGTAATTTATTGCCTTTCCGTGCGACGTTATCACAATGAGATTCAAGATTCGTTCGCCCTTAAGAAATGACAACTTTCAGTTCGTGCACATAGCTTGTCGGTAACCTTTTGTTCTCTTATGATGTTCGCTATATCTTGTACAGTATGCAATGAGGGGCAATTAAAAGCGCCAACACG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR051022	Family	Notch Signaling and Cell Fate Determination	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007157	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0032991	Cellular Component	protein-containing complex	Interproscan
GO:0045197	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06051	DLL; delta	-	Endocrine resistance	ko01522	deepkoala