Gene detail

Detailed information of pspe_0.1.m1.9351.m1 in Pachyseris speciosa

Genomic Location: Sc0000022:786330...806204
NR annotation: CAH3152148.1, unnamed protein product [Porites lobata]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

pspe_0.1.m1.9351.m1

CTGGGATAAGGTCGTGTACTTAGACTGGCGTGAGTTCGATTTGCAAACCATTTTTCGCGGTTTCGCGGTGTCATTCGCGGTCTATTTGGGCAAATTCTTGGAATCATGGAAAAATTGCTTTACAaccatgatttttttttttatatttaacaaatatttACCTGTGGAAACTGCCAATACAGTGGTTGTCCTCAAGAGGGCACTTTTTTATTCGCATAAATGGGAACTGAAGATCTGTAAAGAAAGCTTCCTTTGTTCCCAGGGACATATTTCACCCCCCGGCTACAGTAACATGCCCATCTAGGCGCCTTTTAATCCGCCGGCAAGCGAAGCAAATTAAGTGCTCTTTGCAGGCTTGCAAGATCGTCTACGAGTGTCTGCACTCTGCAGCGACGAATATGGCGGGTGATTTGATCATCCCTTTCACTCCTGTGAATGTAAAGCATGCATCATCTTCTAATGACCAAGAGATGTCAGATGAACAGAATTCAAAAGAGTTTGTGAATGGTCAGCTGATTTGGGGCAGACTGAAGGGGTATGACTGGTGGCCTGGGATTATTGTTTCACACATCACTGCTCAGAAAGCTCCTCCTTCTCCAAGTAATCATTGGATCAAGTGGTTTGGGGATAATAAATTTTCACTGCTGCCTGTTCAGTGTTTGCGACCACTGTCTAAATTCAAAGAAAGTCTGAACTCTGGGAAGATGAGGGGAATTTACAAAAGAGCTGTTGTTGATATTTTGGAGGTGGCTTCCAGAAGGTGTGGAAAAGTGTTCttgaaaaatcaaaacaaacagacaacacAAGCCAAGAAAAGTGGCAGAACTAGGCAAGCAAAGACAGAAGCAATGCAAACAAATGAACAACAGGATGGAACACTCACTGAAAAAGAGAGACAAGACTTGATGGTACAGTGGGCTGTGAATGGCTTTATACCAAGTGGTCCCAAAGGCTTTGCTCCAGATGAAGAGGAAATGATTCCCAATGCAAATGCTGCCGCTAGTACTGTTATGGATATGTCATCTGACAACACTGAATTACCTGCAGACCACAAGTCAAGGTTTGGAAAGCCAGTCACTGAACCAAACCTGGCAGCAAATATTAAAGctCTTTTTGATGAAGTGGCTGCTGGGAAAAGAGATATTGAAGgaaTCTGTCTTGCCTGTGGAGATCTCAGAGTTTGTGCCAAACACCCGTTGTTTAAGGGAGGCCTCTGTAAAGAATGCAAAACATCTTTTCTTGAGAATGTTTATCTTTATGATGAGGATGGCTCCCAGATGTATTGCACTATCTGTGGTGACGGAAAGGAGGTTTTTATGTGTGATAACACCGGATGCTTCAGGTCATACTGCAGCCTGTGTATTGGTATGCTGTGTGGTGTCAGTGCTGTAACAAAGATTGCAGCATGTGAGAAGTGGGTGTGTTATATGTGTTCAGGGAAGACCCGAGGATTGATTACTTCACGGAAGGACTGGTCTGCTCGACTGCAAGAACTGTTCCTCAACGACAAAGAACAGGACTTTAAACCACCACACACTTTCCCAGCAATTACTCCAGAAGAGCGCCGACCAATCCGAGTGCTGTCATTGTTTGATGGAATAGCCTCTGGATTCCAAGCCTTGAAAGAACTTGGCATTGAAATGGAACTCTACTGTGCTTCGGAAATTGACGAACAAGCCATCCAGGTTGCCAAAGTTCAGCATGGAGATAAAATCCTTCATATTGGTGACATACAGAAGGTTGCCAGGGCACAAAGGGAACTGGTCgtcttttctttgattttttccGGCTCCTTGAGTGTGCCCGCCGAACTGGACCGGCTTTCCGAACTGGATGAGAGCCTTTTCTGGGAAATGTTGTTGTTCACCAAGGTACAAACTCTTACCACTAACGCCAACTCCATGCTTCAAACCAAGAAAGGCCTGCTTCCAGTTCAGTATGCAGCCAGTGATGGCCAAGAGAAGGAGGACATTCTCTGGATCACAGAGATGGAAAGGTTGTTCGGCTTGCTTGCCTTCTCATTACACTGACGTCAGCAACATGGGCCGGTCTCAGAGACAGCGGTTGCTCGGGAAGTCGTGGAGTGTTCCTGTAATAAGGCACCTTCTGTCCCACTGAAAGATTACTACAAGTGTGAACCATAGCATGCGCGACCTCATTTTATTGTTCAAGTACCTGACACTGTTGTTTCTTTCAAATCTATTTTAATGCTTGTTTGATATTATACGTAATCACAGCTTTAGTTTAGAGTGATGCTTCATGGGTTATCGATAACTTTTTAAATTCAACTCGTCTGTTTGAATTCTCTTTATCCATTGGTAATATAGTTCTCTGCGATAATTTGTGGGTAAATCTTGGGTATCTGTTCTGTTCAAAAATTGCTTCCGCGACTTGCGAAAGATCGAAATAAAGTCCTTGTTAGAGTTTTTGACAAAATGTGTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4W5Z4	DNA (cytosine-5)-methyltransferase 3A OS=Gallus gallus OX=9031 GN=DNMT3A PE=2 SV=1
O88508	DNA (cytosine-5)-methyltransferase 3A OS=Mus musculus OX=10090 GN=Dnmt3a PE=1 SV=2
Q1LZ53	DNA (cytosine-5)-methyltransferase 3A OS=Rattus norvegicus OX=10116 GN=Dnmt3a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004545 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan
PF21255 all species →	ADDz_Dnmt3b	DNMT3, ADD PHD zinc finger	Domain	Interproscan
PF17980 all species →	ADD_DNMT3	Cysteine rich ADD domain in DNMT3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR049554 all species →	Domain	DNMT3, ADD domain, PHD zinc finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR025766 all species →	Domain	ADD domain	Interproscan
IPR040552 all species →	Domain	DNMT3, cysteine rich ADD domain, GATA1-like zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23068 all species →	DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for pspe_0.1.m1.9351.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.