Gene detail

Detailed information of pspe_0.1.m1.9623.m1 in Pachyseris speciosa

Genomic Location: Sc0000023:2259206...2289732
NR annotation: XP_029206013.2, uncharacterized protein LOC114969842 isoform X3 [Acropora millepora]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pspe_0.1.m1.9623.m1

ATGTCCCAGTTTAAGGTCGAAAAAGTCACCAAAGTAAAAGCTCTGACGGATTTGTCGGACAAAGCTAAAGTTAGCGAGAAAGCCGAAACTACCGCCAAGCGAAATCGAGGAACTTCTGCTACAAGCACCGAACGCCCAGCTTCATCAAGTGGACGACAAACCTCGCTAAAGTTAATCATGAAAGAGGTAGTGTGTACTGTTTGTGAGTCAAAGGAGCCAGTTGTGTGTTGTGCCACATGTGAGGCTCTGTACTGTGAAAGCTGCAAAGTCTCCGTCCATGAAAAGAATTGCCCAGCTTCTCAGCAAGGTAAACAAGTGCCCAGTTCTGTAACAGGTGTGACGGAAGCTAAGAAAAAACCAACAACTCAAGGAGCTGTACCACCGGTCCCACGTTCAAGAACAAAAGCTGTCACACAACCATCATCTCAAAGGGCAGTTAATGGGCTAAAGAAAACTGAGTTTAAGAAAGAGAGCAGTTATGATGCCAGTGACAGTGACTCGGAGCATGGGAGTGTTGATCGATTAAACACTGATGGTGACTTTGGTTACGAGACAGGATCCCTTGATGACAGTGATGTATCGACAGGGGATGAGTTTCGCCCTCTGATTGTAGCTGAAGGTCTGGGTATTGCTGCTCCTGTTGAGGTGCAGACGTCATCTAAAGATTCCAGGGGTGGAAATGGCAATGAAAGAGGAGGGCGTGGTGGTGGCAGACCAGCAGTTTTGGAGTATGAAGAAGTTCAAATCATAGATGGTGGCTTTGATAGGTCAAATATTAAAGTAATGCCTACAAACCAAAGGACTATGGATGCAGAGACTGATGATTTCCATACCATTGGACCAAAGAATGATGTCTATGCCGTTGTACAGAAAAAGCCAAAAGACACAGATTGTAAAAAATCTGATAACACTACACGCCCACCCAGACAAAATAGCCCAATGCAGAGGCCTATTGTTGAGCTGGGTGATGTTGTACCTGCAATTCCGGGTGGACGGAAAGATTCTAACATGTATGAAGCTATAACAGGCGAACTTCAAAGTATGATTTTGGCTTGTGATGATGTAGAATTTGAAGAGAGATCTTCCAGGAAAAATTCAGTTGAGAAAAAGACACAAAAAGAAAAGAGGGTGCCCCCACCAATGCCAAAGCCTTATGCCGGACCTGGTTTGAATGCTTCAGTTGCAAAGGAACTGCAAACAGAAGAAGCGAGGAAAGATGATTGGAAAGAAAATACAGAGGACCCTGTGTCAGCATTATATGCGGTTGGGCAAAAGAAACCGGAAAGCAAACCTGATGAAGATAAATCTTCTGAAGAGCTGAACAACCAAGCACCTCCAGTAGAGACAGAGCCACAAGAAAGTCAGCTGTCGTATGCTACAGTTCACAAAGTCCCCAAATCCAAGAAGAATGATTCGGTGGAATCCCTGGACCAGCTGAGAATACCTGCATCATCAGATGATGATAATAGTGATGGAGAATTGCCGCCGCCTCTTCCCTCTAGGTTGCCAAATCTTGAGGATACCATGAAAAGAACTGAACCCTCTGAGAATTTCTTTCAGTTTAGTAACAAGGAGAAACAAGAAGAGAAGCCTAAAAAGGGTGGTGGATTCcaaattttcaaaaagaaacATCGCAGACAGATGTCGGATGGAAATGTAGTTGTTGATAAAATCAAGAACGGCAGTGATGACGGCGGTCTTGCTCCAAGTCCAAAGTTCCAGCATCGTCGTTCAAAATCACAGGCAGACGTCATGAACATATTGGAAAATGGGGTAGCACCTCTAAGCCCTTCAGAAGCTGAAGTTGACATTCTCTCTAACAAAGAGCAGAGTTCAGCTGGCAAGAAACCATGTATCAAGCCTTATATGGAAGTTGACATATCTGAGCCTCCCCTTACCCCTACTGAAATGAAAGTGAAGAAATCTgtgggaggggagggtgagGATTGCAGTGGACCATACGAGTTACCTGAGGGGTGGAGGGAGGTGAAGGGTGATAGTGGCACATATTACTGGCATGTTGCCTCGGGAACAACTCAGTGGACACTACCTCAAGTAGCAACAAGGCCAAAGAAGAAAGTTAGCGAGGAAACAAAATCTCCGGAAacagcagaaaggcaaaaggtACTCAGTTTTCCGGTGCATTCTATGGGTTGGATTGAGCTTGAAGAAGGCCAAGTGGCACCTCATAACATGAGTGAGAGTATTGCTAACTGCATCTCAACCCTCGCACAACAGAGGAAGGACCTCTGGCAGACTGGAGAGACCTGGGGCAAGGGGAATGATATCAGATTGCTGTTGGAGGGAGATACTCTTAAACTGGCAGAACCAAGAACAAAGGCTACTCTGCTAGTCCAGCCAGTCTCTAAAATGAGGGTGTGGGGCGTCGGCAAGGAAGATCAAAGGGACTTTGCATATGTCGCTAGAGATCCTTCAACTGGTAAACATAAGTGCCACATGTTCCGATGCCATGGCAACATTTCTGGGCGAGCGATCACCAATGCACTGCATGACATGTGCAGTAAGATtctggaagaaaagaaaaaggcacAGGAAAGCAATAGGAAGATATCAGCTCAGAAGCCATGGTCTGACATTATAAACACACCACCTCCATCATCAGCAAGAGATAATGCCAGTTTTAATGAAAAGCCTCATGTAGAACAAAAGAAGAGCTTTTCTGCTAAATATGTTGGCAGCATAGATGTTCCCAAACCAACAGGCATGGAGATTTTGAACAAGGCGATCAACAAGTTGACTGGCAAAGGTGGCACATGGAGAACAATCCTGATTGAAATAAGCATTTCAAACATAAGGATAACAGACTGCACGACTCAAGAGCTAATTTCAGAAGACAGAGTCAGATTTATGTCTTTCTTTGGTGTTGGGAAGGATGAAAGACTTTGTGGTTACATAGTGAGCAGAGCTCCTGAGGTTTTCCTGTGCCATGTATTTCAATGCACTCCCAATGCTGCAGCACTCACAAAGGCATTAGCTGAAGCTTGTCAACTGCGTTTCCAGAAATGTGTAGATGCTCATCCTGAAATAATGCAGAAAGTACATGTAGCAGCTGCTGAACAAGACAAGATGAAAGAAAAAACTGACAAGGACAAGGCTGGTTTTATGACGAGTGTGCAAGGGTTGCTAGGAAAGCTTGGTCCCAAGAAAGGGGGAGGGAAGAAGGAGGAGAGCACCTCACCTGACAGTAAATCCTCATCAAGCAATATACCAGTGATCACTTGTAAACCTTCGCACACGTTTATGGTGAAGTACTATGGCGCTCTGCCTGTTGCTGTGGGAACCGGGATAGAAACTGTGGAGGAGGCAGCCAAGCATTTGACTGGAGGAACTCTGCTGGTTTGTCAGTTGGACGTAGCACTCAATGGAGTGACGCTTTATGACAGTCAAAGAAGTGCGCTTTCAAAGAGAAGCTTAGATGCCGATACGATATCATACTGTGGCCTGACAAGCAACAGAAGCCACTTTGGACTCATACAAAGCATGGGAGGTGGAAAATATGTCTGTCACGTGTTTGCAGAGTACAAAACAAAAGCTGGTCCTATTGTTGCTGCCATTCACGAGACTCTGTGA

Transcript

pspe_0.1.m1.9623.m1

CTTTTATTTCCTGCTATCAAGTCATCGTCTCGTCTGCATTCAAAATACTGATGGTGGGGGCTTACTTCCACTCTCATCAAACATGCAAGGCACAGCCTTTTCGACCCGCTATGTGAAGTCTACTGTGTTGTGATCGATCGAAAAGGCAACTGAATTTTTAGTTTTGTTGGTTTATTATGTCCCAGTTTAAGGTCGAAAAAGTCACCAAAGTAAAAGCTCTGACGGATTTGTCGGACAAAGCTAAAGTTAGCGAGAAAGCCGAAACTACCGCCAAGCGAAATCGAGGAACTTCTGCTACAAGCACCGAACGCCCAGCTTCATCAAGTGGACGACAAACCTCGCTAAAGTTAATCATGAAAGAGGTAGTGTGTACTGTTTGTGAGTCAAAGGAGCCAGTTGTGTGTTGTGCCACATGTGAGGCTCTGTACTGTGAAAGCTGCAAAGTCTCCGTCCATGAAAAGAATTGCCCAGCTTCTCAGCAAGGTAAACAAGTGCCCAGTTCTGTAACAGGTGTGACGGAAGCTAAGAAAAAACCAACAACTCAAGGAGCTGTACCACCGGTCCCACGTTCAAGAACAAAAGCTGTCACACAACCATCATCTCAAAGGGCAGTTAATGGGCTAAAGAAAACTGAGTTTAAGAAAGAGAGCAGTTATGATGCCAGTGACAGTGACTCGGAGCATGGGAGTGTTGATCGATTAAACACTGATGGTGACTTTGGTTACGAGACAGGATCCCTTGATGACAGTGATGTATCGACAGGGGATGAGTTTCGCCCTCTGATTGTAGCTGAAGGTCTGGGTATTGCTGCTCCTGTTGAGGTGCAGACGTCATCTAAAGATTCCAGGGGTGGAAATGGCAATGAAAGAGGAGGGCGTGGTGGTGGCAGACCAGCAGTTTTGGAGTATGAAGAAGTTCAAATCATAGATGGTGGCTTTGATAGGTCAAATATTAAAGTAATGCCTACAAACCAAAGGACTATGGATGCAGAGACTGATGATTTCCATACCATTGGACCAAAGAATGATGTCTATGCCGTTGTACAGAAAAAGCCAAAAGACACAGATTGTAAAAAATCTGATAACACTACACGCCCACCCAGACAAAATAGCCCAATGCAGAGGCCTATTGTTGAGCTGGGTGATGTTGTACCTGCAATTCCGGGTGGACGGAAAGATTCTAACATGTATGAAGCTATAACAGGCGAACTTCAAAGTATGATTTTGGCTTGTGATGATGTAGAATTTGAAGAGAGATCTTCCAGGAAAAATTCAGTTGAGAAAAAGACACAAAAAGAAAAGAGGGTGCCCCCACCAATGCCAAAGCCTTATGCCGGACCTGGTTTGAATGCTTCAGTTGCAAAGGAACTGCAAACAGAAGAAGCGAGGAAAGATGATTGGAAAGAAAATACAGAGGACCCTGTGTCAGCATTATATGCGGTTGGGCAAAAGAAACCGGAAAGCAAACCTGATGAAGATAAATCTTCTGAAGAGCTGAACAACCAAGCACCTCCAGTAGAGACAGAGCCACAAGAAAGTCAGCTGTCGTATGCTACAGTTCACAAAGTCCCCAAATCCAAGAAGAATGATTCGGTGGAATCCCTGGACCAGCTGAGAATACCTGCATCATCAGATGATGATAATAGTGATGGAGAATTGCCGCCGCCTCTTCCCTCTAGGTTGCCAAATCTTGAGGATACCATGAAAAGAACTGAACCCTCTGAGAATTTCTTTCAGTTTAGTAACAAGGAGAAACAAGAAGAGAAGCCTAAAAAGGGTGGTGGATTCcaaattttcaaaaagaaacATCGCAGACAGATGTCGGATGGAAATGTAGTTGTTGATAAAATCAAGAACGGCAGTGATGACGGCGGTCTTGCTCCAAGTCCAAAGTTCCAGCATCGTCGTTCAAAATCACAGGCAGACGTCATGAACATATTGGAAAATGGGGTAGCACCTCTAAGCCCTTCAGAAGCTGAAGTTGACATTCTCTCTAACAAAGAGCAGAGTTCAGCTGGCAAGAAACCATGTATCAAGCCTTATATGGAAGTTGACATATCTGAGCCTCCCCTTACCCCTACTGAAATGAAAGTGAAGAAATCTgtgggaggggagggtgagGATTGCAGTGGACCATACGAGTTACCTGAGGGGTGGAGGGAGGTGAAGGGTGATAGTGGCACATATTACTGGCATGTTGCCTCGGGAACAACTCAGTGGACACTACCTCAAGTAGCAACAAGGCCAAAGAAGAAAGTTAGCGAGGAAACAAAATCTCCGGAAacagcagaaaggcaaaaggtACTCAGTTTTCCGGTGCATTCTATGGGTTGGATTGAGCTTGAAGAAGGCCAAGTGGCACCTCATAACATGAGTGAGAGTATTGCTAACTGCATCTCAACCCTCGCACAACAGAGGAAGGACCTCTGGCAGACTGGAGAGACCTGGGGCAAGGGGAATGATATCAGATTGCTGTTGGAGGGAGATACTCTTAAACTGGCAGAACCAAGAACAAAGGCTACTCTGCTAGTCCAGCCAGTCTCTAAAATGAGGGTGTGGGGCGTCGGCAAGGAAGATCAAAGGGACTTTGCATATGTCGCTAGAGATCCTTCAACTGGTAAACATAAGTGCCACATGTTCCGATGCCATGGCAACATTTCTGGGCGAGCGATCACCAATGCACTGCATGACATGTGCAGTAAGATtctggaagaaaagaaaaaggcacAGGAAAGCAATAGGAAGATATCAGCTCAGAAGCCATGGTCTGACATTATAAACACACCACCTCCATCATCAGCAAGAGATAATGCCAGTTTTAATGAAAAGCCTCATGTAGAACAAAAGAAGAGCTTTTCTGCTAAATATGTTGGCAGCATAGATGTTCCCAAACCAACAGGCATGGAGATTTTGAACAAGGCGATCAACAAGTTGACTGGCAAAGGTGGCACATGGAGAACAATCCTGATTGAAATAAGCATTTCAAACATAAGGATAACAGACTGCACGACTCAAGAGCTAATTTCAGAAGACAGAGTCAGATTTATGTCTTTCTTTGGTGTTGGGAAGGATGAAAGACTTTGTGGTTACATAGTGAGCAGAGCTCCTGAGGTTTTCCTGTGCCATGTATTTCAATGCACTCCCAATGCTGCAGCACTCACAAAGGCATTAGCTGAAGCTTGTCAACTGCGTTTCCAGAAATGTGTAGATGCTCATCCTGAAATAATGCAGAAAGTACATGTAGCAGCTGCTGAACAAGACAAGATGAAAGAAAAAACTGACAAGGACAAGGCTGGTTTTATGACGAGTGTGCAAGGGTTGCTAGGAAAGCTTGGTCCCAAGAAAGGGGGAGGGAAGAAGGAGGAGAGCACCTCACCTGACAGTAAATCCTCATCAAGCAATATACCAGTGATCACTTGTAAACCTTCGCACACGTTTATGGTGAAGTACTATGGCGCTCTGCCTGTTGCTGTGGGAACCGGGATAGAAACTGTGGAGGAGGCAGCCAAGCATTTGACTGGAGGAACTCTGCTGGTTTGTCAGTTGGACGTAGCACTCAATGGAGTGACGCTTTATGACAGTCAAAGAAGTGCGCTTTCAAAGAGAAGCTTAGATGCCGATACGATATCATACTGTGGCCTGACAAGCAACAGAAGCCACTTTGGACTCATACAAAGCATGGGAGGTGGAAAATATGTCTGTCACGTGTTTGCAGAGTACAAAACAAAAGCTGGTCCTATTGTTGCTGCCATTCACGAGACTCTGTGAAGACTAAATAAAGAACAAAGAGAATACCGGTGACAGTAAAGCAACCCTGAAAGAATTTTGTAAATAGTATTTCTGAAAGGGAATCAAAACTTTAAGGAAAAGAAGCAGAACAGTAtatcatttttgtttgtttcaagTCCCAAGTTGATCTCATTTCACTAGGGACTGGTGGGGGTGTAGATTGCTCCCAACCTCAACCCCTTGAGTGTTTGATAGTATAAATTATTCTAGTGTTGAAAGGAAATAGTTAATCACGTCAAACGTAAAATTTATGTGCTGCAATCTGTATGCCATTGCCGTAgtcatgtttttaaaaataattaagaaaatATTGAATAGTCGTTGCCTTTAAATTAAATCAAGGGACAAAATTTTGCCACCATGACCAACCTTAAATAGGTAGACAGTCATTAAAATTTAAGTTAATATTTGGTTTATAATATGAGTATAAATTGCATTTAAATAGATGGCCAAACAGCGAGTGGGAAATTGGTTGTCAGGATTTGAGTATTGCTATATTGAAATCTAATATATGTTGCTCACAGTTTCTAACATAATTTTGAATATTATTAGTTTTATACATTATACATTGTTTTCTATTTGAGTTCATTTTCAGACCGTTATTTTTGTAATATTCTTCATTCTCTATGTTAAGAAACGTTTTGAAAGGAGGTGAAGAAAATCCGTGATCACTGACAGTGTCCAAAGTAGTGAATAAGTGAACGAATCGGTCGTTAAGGTGTGGAGAAGAAAATGTGCGAGCAATTATCTTCTTAAACCGTTtagtgattgattgattggttggttgattaAATGATTGATTGAATGATGGATTGTTTGATGGACTAGTGGGTTGATGGATTGATTGATGGACTGAATTGATTGATtcttgattgattggttgacgGATTGTTTAGTGATTGATAGATTAGACTGAAGAGAAAAACAAGAAACGTTGGGTTGAAAGCAGTCCTTACAAAAGAGTGATCCAGTTTTTGAATAAAGTTTTGAGTAAATTGGTGAAAAATGCAGTTTTTGAAGTAAACGGAGCGGGATGCGATCAAACTGCAGTTGAACGTAATGACAAAGCTTTTTTCCTGTAGAGTTTAGTGTAGGAAATACAATACTCAGGATAGAATTCTTAAAGAAGTACTATTTGGATACAGTTGGAACCTCACAATAGGATTGTAAAGAGAATAGTTTGCTGCAATTACATTTTACAGGTTCAGTAACTGAAAATAAGATGATTTATCGCAACCTTTCAAAGAAACTTGAATTGACTGTACAGTATACAGGGGAACTTGTGAAGGACAGAAAATAATGTTGCTATAGTTTACAAATgggaaatgtaaaaaaaatattctatGCCCTGGGAAGGTAAGGCGACTTTTATAAGAAGGGTTAGGGTTTGGAAAGAGGTTGGTTTGATATTGAAATTTTGAAGGTATGCAGGCAGGCTCCTGTAAAACGTACGACCACTTTGGAAGGGTACGCGGCGTGAGGCATTTCAGCAGTTGCAAAGTCAGGAAAGAgtattgaaaaatatttttatccttcAGTTTTGACTAGGAATCTTCTTTATCGTAAATTTAAAATTAGCtttcaaaaacaatgaaacgaaaacatcTCTTAACTTTAACAGTGCCTGACTGTACCTCTGAAAGTTCCACCTCtcattttaaaaatagtttaatACCACGTTACCGTTAATCGGTCTCCAATAAACTGGCCTTGTTCGCTAATTTTGATATTTCAATTAATGATTGCTATTATTCGTTTATGGTATAAAAGGGATAACTTTGTGACAATTATCTGCTAGAAAGGTCAATGGAAAAGGTTATCAAAGTTTAAGATAGTACAGTAATTCAGATTAACGTAATATATTAAATATTGAATTAAATTGACTATGAGTAAAATGTATTCAGATTATTAATTGTTGTTAATGAAATGCATTTCCAAATGCATCGTTATTTTTGTAAGCAATATTAGAAGATATTAGTTATTGTAATTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00213	Amyloid beta precursor protein binding family B member 1 OS=Homo sapiens OX=9606 GN=APBB1 PE=1 SV=2
Q9QXJ1	Amyloid beta precursor protein binding family B member 1 OS=Mus musculus OX=10090 GN=Apbb1 PE=1 SV=3
P46933	Amyloid beta precursor protein binding family B member 1 OS=Rattus norvegicus OX=10116 GN=Apbb1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003371 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00640 all species →	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039576 all species →	Family	Amyloid beta precursor protein binding family B member 1/2/3	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR006020 all species →	Domain	PTB/PI domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14058 all species →	AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001540 all species →	Molecular Function	amyloid-beta binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04530	APBB2, FE65L; amyloid beta A4 precursor protein-binding family B member 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.