Gene detail

Detailed information of pspe_0.1.m1.9708.m1 in Pachyseris speciosa

Genomic Location: Sc0000024:885678...911735
NR annotation: CAH3046987.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.9708.m1

CTTTGACAAAAACTTTGGCGGGAATCGGCGATCAGATGTGTTTTTCATAATAGTTCTCTTAGATTTTCTACAACGTTTACTCCCGAAAATGCCTAAAGCGAAGGATAAAACTAAACGAAGAAGAATAGAAGAGTTAGAGGTGTCTGAGTTGGTCAggtatttattatttgtggaCCGAAAAAAGTACCCCATCAAAAGAGGagATATCACTAAAAATGTGTTAAAGGAGCATTCCAAGGCATTCAATCAAGTTTTTGAACATGCAAAGAAGAACTTGCAAAAGGTTTTTGGAATAGACGTTGAGGAAATTGAAGTTGGCAAGTCAAAAGGTTACATTCTGATCAGTGGCGACAAGAGTGAAGCACATGGTGAACTTATTGACTGGGGAGATAATCTGCCCAAGATGGGCCTGCTGATGGTTGTGCTCAGTCTAATCTTTATGTCAGACCATGTGTTAACTGAATCATTACTTTGGCATACTTTGAAGAAACTTGGACTTGAACAAAAGATTGAACATGAAGAGTTTGGAGACCCAGATAAATTAATATCACAGGAATTTGTACGACATTACCTTGACAGAAAGAAAGTAATCGGCGGAGACGAGGCTGCGTTTGAATACAGATGGGGCCCACGAGCAGAAAAAGAACTCAGTAAACGCCAAGTGTTACAATTTGTATCTAAGCTCTACGACACTGAAATGGAGTCTTGGACGTCACAAATGAGAGAAATACTTGCTGAAGAGGAGAAGATGATGAATGGAGTGGAGTGAAACGGAAAACAGAACTTCAAGCAACCAAGGATTTGTCTAGCAGCAGTGAAGACAATTTTTCTGTGCGATTGCCATGCTATGCATGCGAGATACGAACCGTAATCACAACCGTATGTGGCTAGTGGTATTCAAGTTAACCGTGGACCGAGTTTATTTTCGATGGTTTCTCTGATCAATAAGGATAAATGAATCGTTTTTTGGAACAATAAATGACTGTAGACAAGGAAAACACTTTTCAAGCTGACCTGCAATCAACGACGACGAAAGGTGCTTTTTATACGGCTCCTGGCAATCACTGAAGATGACTGCATTTATCAAAACTTTACGATAATCATCTATTCTAGGTGCGCTATTGTCAAAACTATGAAAATATGTTGGGCCCGAAAAACCTTCCTTTGCGCTCAGTGTCTTGCGAGAAATGACAGACGAAGCTGTGGTCAAAACTATGAAATCATGTTGAGCCCAAAAAACCTTCCTTCGCGCCCAATGTGTTTTGCGAGAAATACTTGACGAAGCTGTGGTATCTTAAGGGGAGGTGAGATGCTAATTGGTATTGGAGCTACGGAGGTGtacaatatacattctttctACCGGCTTGTTTACCGCACTAGTATTTTTGATACACGCATTGAGATGAACTCCTGATGtaatgagatgcacgctccgcatgagttcagcatacggagcgtaagcaagcttgtcgattcgtacgatcCGTACGGAGCTTACGAAAAAGTTGTTACGTCGCATTTTAATTCAAAGTCAGAGATACAATCAAGTCTACATGCTTTGACTCTTAGAAGGTGATTTCATGCACTTCTTAAAATAGTTCTTCTCAGCTTATTTCGCCTGAAGCGCCGCCGGTTCACACCAAACGTTTAAATGTGTTTAAATGTTGTTTAGTTTAACTTTTTTTCGCCCCTGTTTATACTTATGTGTGACTACCAGAACGAAATAATAATAGAAAGTTGTGATTTAGTCAATAacgagcttaagcaacgaggacgaggacggcaacgagaacgtcacaaaacaatacatGTAGGCttgatgagcaaaaacaattcctctgcacgtgcatttacattttggtacatttctttgccgtcctttgcaaaacaacgtgaaatgaccgtGAGCCGAtgacggcaatttttttttctacttcataacgttttcgttgccgtcgtcgtcgttgcgtaAGCTCCCTAATACCGTCACGCGCAAACTCGGACAAAATAATTCCGAGTTCTCTCAACAGGAGGCTAACTTACCAGGTCTTCCGCTCATTCACCGTGCTAGAAATCAGTTATCATCTCACTTTCATCATGAAATAGTAACTGTAGTTAATTGATGTTTTCAGCAGACATTTCATTTTATATGTCAAGGACGCTTGGaagtaatttttaaaatctTGTTGTTTTTAACTTAACAGCATTAAAACATGTTCAAGCGCTGGTGTGAACGGACAGtattagaaatgcaaatgaacTGAGCGTTCATGATACATACCGGATTCAATTCTTTTATCGTAGCTTCTCCTGGAGAATCAAAAGAAAGATATACAAAGTTACAGTTAGAAAAATGCAGTATAAATATGTTTTATTTCGTTCATACTTTTGTATTATTGTTTCTGTTCATTGGTAAatgtaatatacatgtaactcTTCCAAATGAAAGTCTTGGtattaaaaactgaagaaaattaatttcgGCTGAGGCTCGTCCCAATCTTCCAGAAGCGCGTGTCGTTGCCAGCAGTCCGTGGCGAAATA

Protein

Uniprot

Uniprot term	Description
Q96MG7	Non-structural maintenance of chromosomes element 3 homolog OS=Homo sapiens OX=9606 GN=NSMCE3 PE=1 SV=1
Q9CPR8	Non-structural maintenance of chromosomes element 3 homolog OS=Mus musculus OX=10090 GN=Nsmce3 PE=1 SV=1
Q9UNF1	Melanoma-associated antigen D2 OS=Homo sapiens OX=9606 GN=MAGED2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01454	MAGE	MAGE homology domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041899	Homologous_superfamily	MAGE homology domain, winged helix WH2 motif	Interproscan
IPR041898	Homologous_superfamily	MAGE homology domain, winged helix WH1 motif	Interproscan
IPR002190	Domain	MAGE homology domain	Interproscan
IPR037445	Family	Melanoma-associated antigen	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11736	MELANOMA-ASSOCIATED ANTIGEN MAGE ANTIGEN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22823	NSMCE3, NSE3; non-structural maintenance of chromosomes element 3	-	DNA repair and recombination proteins	ko03400	deepkoala