Detailed information of pspe_0.1.m1.9905.m1 in Pachyseris speciosa

Genomic Location: Sc0000025:2018701...2027339
NR annotation: KAJ7393393.1, DDB1- and CUL4-associated factor 10 [Desmophyllum pertusum]
Species Pachyseris speciosa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6NWH1DDB1- and CUL4-associated factor 10 OS=Danio rerio OX=7955 GN=dcaf10 PE=2 SV=2
Q8AVS9DDB1- and CUL4-associated factor 10 OS=Xenopus laevis OX=8355 GN=dcaf10 PE=2 SV=1
Q5FW06DDB1- and CUL4-associated factor 10 OS=Xenopus tropicalis OX=8364 GN=dcaf10 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008763 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03540
all species →		TFIID_30kDaTranscription initiation factor TFIID 23-30kDa subunitFamilyInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003923
all species →		FamilyTranscription initiation factor TFIID, 23-30kDa subunitInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR039085
all species →		FamilyDDB1- and CUL4-associated factor 10Interproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14588
all species →		DDB1- AND CUL4-ASSOCIATED FACTOR 10Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006352
all species →		Biological ProcessDNA-templated transcription initiationInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0080008
all species →		Cellular ComponentCul4-RING E3 ubiquitin ligase complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for pspe_0.1.m1.9905.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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