Gene detail

Detailed information of scaffold1.g132.t1 in Morbakka virulenta

Genomic Location: scaffold1:5099517...5111507
NR annotation: PIK54847.1, hypothetical protein BSL78_08276 [Apostichopus japonicus]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold1.g132.t1

GGTAACATTGTTGCCGTGTTTCGAGTCAGTTGCGACAAATAAGGGGATAGCAGTTTGAAATTGCCGATTTTCCAGTATTGGTTTTTATGTACAACCATGCTTGATGTGAGCTGTTTGCCGGACGAGGTTTTGTTAAGAGTGTTTCAATACTTGAGTATCAGTGACCTTAAGTATTCGGTGCTGTCAGTTTGCCGATTGTGGCATGAAGTTGCCGAGGACCCAACTCTTTGGAAAGACGTGTGCGGTTGTGTAAACATAGGCGTGAAAACTAGCACTGAAAAGTTTGGTACCCAAGATGTACTTATAAACAGTCTAACCAAAAGGGATATCAGACGCCTGCAGTTTCTCAACCTTGGCTTTGCAGATGTGTACGACTTTTTAAGGCTGCTACCTGAAAGTTTTAGAAAACGGATATTCAGGATTGTTTTTAAAGAGTATGCCGGTCTTAGAGCAAATGATATACAACATATATTTTACCTGATGCCAAACTTAAGTGAGCTGGTATTCCTTGGGGATAAAGGACTTTCTTTCCAAGAACTATTGGATTTAAATGGTATTATTTTCCCTACGTTAACCGTTATTTCTCTTCCAGCTGTTAAGCCTGGTATCGAGTATTGCAGAGCAAACGCGACAGGGAATCCTAGAGCTATTTATAGCAGATGCATGGGGAATTTTTTAAGTTGCTTTTCAAACTTAAAGTCTGTATCTTTTTCAGGTGACCAGCATATATCCGGCGAATTTCTTAAAGGTCTTTTTATTACTTGTAGAAAAGTGGAACACTTGAATTTGAGTTGTTCTCAAATAACAGATGATGATCTTTTCGCTGTCTGTACAGAAGGAACAGAGAGTAATAGACTTGTCACTTTAAATTTAAGCAAATGCAAAAATCTTACTGACAAATCTGTAGTTATTATACTAGATAGAAATAGCAGAAGCTTAGAAGAGCTGCATCTAAATTTTGTTGAAATTGGGCTACCTTCTTGCAAAGCAATAACCAAACTTACCAGAATTAGTTCACTTTATTTGGAAAGCAAAACCTTGGTTTCCCAAACCCTCGTATCACTAAGCCCTATCCTTGGTCATATAAAGAAGCTTAGTCTTTCGTCATATTTGCAGCTGACAACACCATCATTGTTCAACGTCCTATCAATGGGTGACAATTTTACCTGCGTAACTTATTTGAACATTGCAGGCTGCCCAGCTGTTGATGATCGTTGTTTGAAGGTCATTTGCCAGAAAGCTGTAAAAATTGAAAGTCTGGACCTGTCGTCTTGTACCAATATCACAGATGTTGGATTAAAGAATGTATTTAAATATTTATCAGGGATTAGGTGTTTTGTTATGAAGTGGTGTATAAACGTTTCAGATGTGGGGCTATCTAGTGAAATAGACAATCGATCTGATGTTATTGAAGTGAGGCCATATCCAATAGTGTCAGACTTAAAGAGACTCGAAGCACTTGATGTTAGTTTTTGTCCAATGTTAACCAATGTATCTTGTTCCGTACTTAAGGATATTACAACTTTAGTATCTTTACATTTAAATGGCCTAAAGAACATAACTGATGATGGTTTGAATTTACTGTTGAATAATCTCAAGTCCTTAGAACTTCTTAGTGTTAAGAGCTGCAAAGAACTCACTGATTTTAGTTTGCAACAAACTGTCAGATTATTACCAAGGATCAATAGTCTTGATATTTCGAAATGTCCAAATGTTAATGATGCAACTTTAAGccgtctacacaagcttttcaatcgcaacaacacaaaagtgagctgcagctgcacagataatgttgggaaaatcatcaactcccacaataaaaagatagcatcgcctaatccatcggcgaagttatcatgtaactgcaagaaaaaagatgaatgccctttggacggtgactgtagagaaaaaccagtcatatataaatgcgaagttggtgcgccggaagtccagaagaaagtttatattgggttgactgaaaaagacaagatactacggacataagcaatcattcagaaattagaagtacagaaacaacaaaaccctttcatcgtatgtatggaacctgaaagaaaagaacatcacccccaccatggtcggtaataactcacccgcagctct

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR050648	Family	F-box/Leucine-rich repeat	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan