Gene detail

Detailed information of scaffold1.g183.t1 in Morbakka virulenta

Genomic Location: scaffold1:6720310...6782837
NR annotation: XP_031552780.1, UDP-glucuronic acid decarboxylase 1-like isoform X2 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold1.g183.t1

CATAGTAATTTTTTGAGTCCAATCTGACAGGTTATCTTACATGAAGTAAATGTGAAAGATATTTCCCATCGAATAGAAGAATTAGCCTGCTTATTAAGATGAGTACATCTCATATTGGAGGCATTCGATTGTTATCGAAAAGTATTTAATTTTAATTCAAGAACACTGTTTAATTAAGAGTAAAAGAAATTGATCATGAACACACAAACTTAATTCTAGGGGCAAGGGTGCCTTTAATGGCATCGTTAGCTTATCATATTAATCAAGAAAAGATACATTACTGATTAATTACTCTTTGAGGAGGTAGTGATTTTAAGCATATTTTTGAAACATTTAGCTGATCAACGAAAGTAGGCCTTACATTGGAAGAAACTTTTTGTAGGAAATTGAAATATGGCACTGAGGATAAGTGCCTTCTCTCTTGGACAAGGAAGAATTATACTGTTTACACTCGTTGCCTGTCTCCTTGTTTTTGCAGTGGTCAGCTTAACTGGTAACAATGAAACACAGAGGTTAGGAAAATTTCCTAGGTATATTAAAGATATGGTTGATAAGCAAATTAGAAATATTGAATTAGAGGTATTGGATCCTTTAAAGAAGAGAATTGCAGAACTTGAGAAAAGCCAAAACAAATATCCTAAGGTAACATATTTGGCAGAAAAAGACAGAAAAAGAGTATTGGTCACAGGAGGTGCTGGTTTTGTTGGTTCACATCTGGTGGATGCGCTGCTCTTAGCTGGTCATGAGGTCACTGTAGTCGATAATTTCTTCACCGGTCGCAAAAGCAATGTGGAGCATTGGCTCGGTCATGAAAATTTTGAGCTTATCAATCACGATGTGGTTGAGCCACTATATATTGAAGTTGATCAGATTTACCACCTTGCCTCACCAGCATCTCCGCCTAATTATATGTATAACCCGATCAAGACAATAAAAACGAATGCTATTGGGACTCTCAATATGCTAGGTTTAGCAAAAAGAGTTAGAGCCCGTTTGCTGTTGGCTTCAACATCAGAAGTATATGGGGATCCAGAAGAACACCCCCAAACTGAAGATTATTGGGGACATGTTAACCCAATCGGGCCAAGGGCGTGTTATGACGAAGGCAAAAGAGTTGCAGAGACTATGTGTTACGCATATGAGAAACAGGAAGCAGTTGAGGTTCGTGTAGCAAGGATATTCAACACATTTGGGTCTAGGATGCACATGAACGATGGACGGGTGGTCAGCAATTTCATTTTGCAAGCACTTCAGGGGGAACCAATTACGTTGTATGGCGAGGGCAAGCAGACAAGATCATTTCAATACGTTAGTGACCTTGTAAATGGGATGATTCTTTTAATGAATGGAAATTATTCAAAGCCAGTTAACCTGGGAAATCCAGAGGAACACACAATTGAAGAATTCGCTCACCTTATAAAGCATCTTGTAGGAAGCAACTCCCAAATTGTGAAAAAACCAATAATGCAGGATGACCCACAAAGACGGAAGCCGGATATTACAAGGGCACGTGAAAAACTTGGATGGAAGCCAGTGGTTCCTCTGAGAGTTGGCTTAAATAAAACGATTGATTACTTTAGAAGGGAACTGCGGAAATCAAAGTTGTCCAAGTTGACTGACCTATAATAAACTGTGGATGGTTGTGCAAGCACATCTTCAAAATTTAGATATAATGCTCTGAAAAAGAAAAAAGGCACTATTTTTTATTTAAGGGTAAAACTGGTTTTTAAATACAGTATAATTACTCATCCTTGTCATAATACGGAACAGAAGACATTTTTGTCAAAAAAAATTTGCCGCAAAATACAGAGAAAGGGTTATCTCACATCGTATTCGGAATTTTAATCTTAAATTGTACTAATAGCGGAGTTACAATTTCAAAAACACTCCGAACTTGGTGTTTTTGTATTCAGATTTTGTCTTAAACATAATTTTAAACATAAATCTGGACACTTTTATATTCAGCAGTTGAAGATATATTTCAACAGAGCTAGGTATGTCGTAGGCAACTCGCCCTCATCTTTTTCAAAATGCCTACTTTTGCTACATTTAATTTATTTGGCAATAGCTTTAGAATATTACAAAGCCCTAGGGATTGGTTTGGACAATCAAATCTCTATCTTTAT

Protein

Uniprot

Uniprot term	Description
Q5PQX0	UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus OX=10116 GN=Uxs1 PE=1 SV=1
Q91XL3	UDP-glucuronic acid decarboxylase 1 OS=Mus musculus OX=10090 GN=Uxs1 PE=1 SV=1
Q6GMI9	UDP-glucuronic acid decarboxylase 1 OS=Danio rerio OX=7955 GN=uxs1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16363	GDP_Man_Dehyd	GDP-mannose 4,6 dehydratase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR016040	Domain	NAD(P)-binding domain	Interproscan
IPR044516	Family	UDP-glucuronic acid decarboxylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43078	UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0042732	Biological Process	D-xylose metabolic process	Interproscan
GO:0048040	Molecular Function	UDP-glucuronate decarboxylase activity	Interproscan
GO:0070403	Molecular Function	NAD+ binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08678	UXS1, uxs; UDP-glucuronate decarboxylase	EC:4.1.1.35	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala