Genomic Location: scaffold1:9828736...9873356
NR annotation: MCP4800870.1, DDE-type integrase/transposase/recombinase [bacterium]
| CDS | ||||
| scaffold1.g269.t2 | ||||
| Transcript |
| scaffold1.g269.t2 |
| Protein |
| scaffold1.g269.t2 |
| Uniprot term | Description | |||
|---|---|---|---|---|
| A0JP70 | WD repeat-containing protein 90 OS=Xenopus tropicalis OX=8364 GN=wdr90 PE=2 SV=1 | |||
| Q96KV7 | WD repeat-containing protein 90 OS=Homo sapiens OX=9606 GN=WDR90 PE=1 SV=2 | |||
| Q6ZPG2 | WD repeat-containing protein 90 OS=Mus musculus OX=10090 GN=Wdr90 PE=1 SV=2 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Other|Beta-prp |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|CDC20 |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|DWD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05018 | CFA20_dom | CFA20 domain | Domain | Interproscan |
| PF00078 | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF00665 | rve | Integrase core domain | Domain | Interproscan |
| PF00400 | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| PF17917 | RT_RNaseH | RNase H-like domain found in reverse transcriptase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR043128 | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| IPR007714 | Domain | CFA20 domain | Interproscan |
| IPR012337 | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR000477 | Domain | Reverse transcriptase domain | Interproscan |
| IPR001584 | Domain | Integrase, catalytic core | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR036322 | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR001680 | Repeat | WD40 repeat | Interproscan |
| IPR036397 | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR019775 | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR041373 | Domain | Reverse transcriptase, RNase H-like domain | Interproscan |
| IPR050951 | Family | Retrovirus-related Pol polyprotein | Interproscan |
| IPR043502 | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR011044 | Homologous_superfamily | Quinoprotein amine dehydrogenase, beta chain-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR37984 | PROTEIN CBG26694 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0015074 | Biological Process | DNA integration | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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