Gene detail

Detailed information of scaffold1.g44.t1 in Morbakka virulenta

Genomic Location: scaffold1:1738624...1749325
NR annotation: XP_046553179.1, LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A2 homolog 1-like [Haliotis rubra]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold1.g44.t1

CGTTGCATTACAGCCTATTTTGCAGTTGCCACATGCCACCATCTTTCTTTTGGTTCGTTCACTTTAACTTGCCAAGAGGTTAATATTTGGACGATAGGACAAAGATGAATGGTGAAACAATGCTGAGTGACAAGGAGGCTTTAAAAAAACTTTTTGTAGGTGGGATACCTATTCCGTTAACAGATAAAGAGTTCACAGCATATTTTAAGAATTATGGAGAGGTAGCAGATAGTGTTATTATCAAAGATAGTACAACGAAAAAGTCAAGAGGCTTTGGGTTCATCACTTTTACAAATTATCAGGATTTAAATGGAGTTCTTCAAAGTAGACCACACTCATTTGATAATAAAGAAGTTGAAGTAAAACGTGCCATTCCCAGAGAAAACAATAGTGATACAGCACACATCCGGTGTAAAAAGTTGTTCGTTGGTGGTGTACCAAAAGATGGCGATGAAGAGCAATTGAAATCGGATTTAAATACATTATACGGACACTGTGGTCTTGGGACAGTAACTAAGGTTGACTTTATCAAAGACAGAGAGAGTGGAAAAAATAAGGGTTATGGCTTCATTGAAGTTGACTCTGAAGATCTTGCAGATCTCATAATTATTTATGATCATAAGCCAAAGCTCAATGGAAAACTCATGGAAATTAAAAAGGCCGAGGAGCGAGGTGCAAAGAGAGGAGCTGGTGTTACAAgaggaggagcaagagttggtgggcgtggtggaagaggaggaggaggtggtggtggttatggtggGTATAGTGGAGGAGAATATGGTGGTGCATCAGAATCCTACAGTGGTGGCTTTGGAGGTCCACAAGATAGCTTTGTAggtggtggtggtggtggtggtggttatggtggtggATATAGAGATAGCTCCTATGGAGGTGGTTATAGTAATGGTGGTGGCTATGGTAGTGGACAAAGTTATGGAGGTGGTGCTGGTGGGTATGGAGGTGGATATGGTGGAAGTGCCTATGGTGAAGGTGCTAGTGGATATGGTAATACACCAACTGGAGGTTATGGTGATTATGGCATGGGTAATTCTGGTGGGTATGGACAGCAGACAAGTGGATTTGGACCTTCTCGAggtggtcgtagtagtggtggtggtggtggtggaggcagtggtggcagtggtggtggCAGAAGATACCAACCTTACTAGTTATGCATTTGGATTACATATATATCTATCTATCTTCAGGTCGAGGGTTAAGTTGTtaagtccaaggtgtaaggaatgcaaaggctaagtctaaggcttaagCCCAAAGTCTCAGCAAGCTCCAGTTAAGTCTGCAAAAGAAACACCTACCTTCTCTTGCTCAGGCTAAGGTGTGCTAGGAAGTCATTTTAACCTCTGTTCCAACTGAAGCTGATTTTTAAAAAGAGATAATAACTGAAAAGGTATAATTTTTCCAGATTAACAGTGCACTTTCAACCTTCAAAGAAGCTTTTAGTTTAAGAGTTTTAAGACCACGGCTTTACGGATTGGATAAATAGTGTTTTTCATCTTGCTGCACAACTGCAGTTTCTATATTTAGTATCCTGCTGTCATGAAAACTAAGAGATTTTATGCTAGGGTTCTAATGGAACCAATTAAGAGTTTGTAAGATTTTAAGTATTTTAAGGCCTAAATGAATGTATAGTTTGAAGTAGATTGGACGGGTGTTTCAAGAGTTTCTTTGTAAGTGTTAGACTTGCTAGAGCCCGCAGTATCAAAATCGTGGACTGCTGAGCCATTATATACGGTAATGCAAGGGTAACTTTGGATGCGATTTTATCAAGATTAGGTTTAAGATAACATCAAAGAGTTTTATTTTAATGATTGTGGCACACTTTAAGCTCTCTTTCTTTTAAAAGAAGCAGGTTCGTTATTGTTTTTCAAACACTTGCGGAGACGACTGAAGGCGCCGTATTACTTCGTATACCCGTATTTGCACGACGGCTGACACCAATTCGGAGAGACCTACTTCATAAAAAGTCGTCATTTGATCTATGTACAGTCGTATGTTTTAAAAGATTCTACTGGTAATAGTGGTCTTTGCTTTGTTTTTTTTTTGTTTTCACTGTTAATGTGTTGTCCAAAGCGCCGAGGGTCTATGCTTGTTTTCCAAGTTGCAAGGAAACTATATTGTTTTTTCAGCGTAGTTTTTGAGGTACACTGTAATAGTTACAAAAGCCACTTCAATGTCAAATTCCGTGTTGAGGAAATTCTGAAGGGCAGTAAACCACTAGACTCCCT

Protein

Uniprot

Uniprot term	Description
P07909	Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila melanogaster OX=7227 GN=Hrb98DE PE=2 SV=1
Q5RBU8	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii OX=9601 GN=HNRNPA2B1 PE=2 SV=1
P48810	Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila melanogaster OX=7227 GN=Hrb87F PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48026	HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12741	HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3	-	Spliceosome	ko03041	deepkoala