Gene detail

Detailed information of scaffold1.g45.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1:476638...527390
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1.g45.t1

atagatcaaccatttcagaacaaacttctttactgttgaataaagaatgtgaattgttttatgatcttgcaatattgacaattgcaaatgcaaaacgatttattttttcgtagatttatgaggaatgattggtcgttatctgatccaaacgcaaacatctgctgatttagaaagtctgccaagctcgagattttctcctgttttatcaaatcgatccagctgctcagggcatcgaagattgacgcttgcttgctatctatgcgaaagtacagaagaggccagtggtgtttgtgatggctgactcaagactcaccttgctgttttgcacgtgtctcattctggctttgaacccactgcttgctaaaagagattcggtgtacaaagatgcatcgcattactggccgttggattacatagtccaatataaggatgcagttagcctctcagaggctaccagttatggtcccaaaggtgtctttaaaggagatggacatgggttcatggagataacacttggaacttcagctcttcgtcttggagaatatacagaaagttgtttgatgaagctgcagaactgccgatctggtctgagttttacattctggtttaacgtgcaggatgcagaacaaagtgttaatacggtgactttgttcaatattaagtcgagtgaaagtgatattttgaagatttcattcttgaaaggccagaaaccatcaatgattttcacaataaacgatggaagcacctctcacaaagctaaattcacattttccgtaaatagttggtctcatgttagcgttatcttcagtgcaccaggaaatttacagatcatggtaaatggtcagcggatattggtcagaaggaacagaatatcaagcatcggaactgctaaaaaagtcacttttatgattggttcttggcttcagcttgggaattatcaagggcctaaagtattactcggtgaagttgcaattttttacaaaaagctgagtgatgctcaaataaagaatattgtcatgaagaatttttatgagaaaatcactttggagaaagaatgccagtcgaacaaaacgtctctaggcgtatcttggaaaacaccgtttgatgattatgagcaaatcattagttacgccatcgttgtgcgctcagatacaaccctcaagtactttactgcaaggagaaaagctaccaaagcaacacttacagaactggctcccgacacgaaatatgacataaacattattgcaaaaactcatactacatattcggtttcaagcaatatcatccgttgtgcgacgaatgcaacaaagaaatcttcgagtaaaggtgatttgaaggttgctgctctatttcataacaaaattcgtgtcacatggacagcttcgccaagctctaatgtcaagccagttgcgtatgggatatctttaactggtgatcctgcattttacagactgtttcattcaaagaaacccctcaattatacgatcggcaatcttaaaccaaaaactgagtatttaatcaaagtcacaattttttcaagctctggactcaaagtggaagaaaagaaattcaaaacaccacgaaaaattgaaataccagcaaacccggtaaggtctctatcagctgcctcgatatcatggaacgcagcaagcctctattggatgcctccggtgaattacaatgatccagccctttattaccaaataaattgcatggcctgtaagacggccaaggtagttgaaactaccaagaatactatcaggcttgatgactttgaagagaataagaagtatgacattcaagtaaaagttggcgcaaaaggagttggcctttatgaagttgcggccaatttgagtttcaaaaccttggttcgtttccctgctccagtggctctaaacgcgacttccattacatgggatacggccatactaaaatggcacccggtaaaaaggacagaagacattgtatacaggattgcataccacagcgaaagcaacgcacaacagatcctccacataaatacgtctgcaacccatttgaaattgaaagacctcagacaacttatgggatattttgtgactgtccaatctggaaatggggaactctttggcgaagaatcaaccaagaaaatgtttttcatcacgctagatcacaatgaatgcattgatggaagtcattcatgtacgaagtttgaacactgtatcaacactgagggatcatactcttgtccttgtcgccaaggttacatcaaagatgacaaaatttgcaaaccaatgaagaaagatgaacccaaatgcccaaaagactttgcaaggaatattcactggagtgtaacgcagaatgggcagatagctcacagcaattgcccgaagggaacaaaaggaattgctcgtcgcatttgcaagaagatgagtgacaaggaaacaaaatggatggaccctgatcttagtgactgtgtttctctctgggtggacagctttgcccagaagatgcgtggtaactctgagaacaagtccagtttgatgaaaaccctcacaactgaatatcaaaagcaaacaaatattgttggaggcgatattcaaaatgtcgtttcgttaatgaatgatatcgttggtatgaccaaaaatacagataatgaaaagattgactcctcagaggaagatttaaaatcgattgcaaaggatctcttgtcactaacggataacttattgtctacaaaaagttcttcaacgtggaatgatctaccaaagaataagaaagcaaaaagtgctggtggaattttgaagactgttgaaaatatggcacgcgtcttcagtcaggcacaaagaaattctacaaacaagaacatggcgctctctatctcgacaccaaatacagtgatggaagtaagaagtgcgtcgagtccagctgcattagaattcacgtcaagctcaaattcacaagctgctgagaacagtattgcagttccttttgctgataacactgccgattcagaagggccaaaatccgtgtactttggctcatttcggagcatcgaaagcctccttggaactgacatgagcagcaaatcacaatcagatagcaccgttggactggcggccaaagatacgagagtatcaaacgtcatagctgcaacgttgtttccaaataaagagagaaaatttgatcagccagttgtcatcgttcagaaattgcctaagcataacaatacagcaaatgtgaactgtgtattctggaaattctcaagcaaaggttctggaatgtggtcagcaaaaggatgcaaattacacagcagcaacaacacgcatgcgatatgtcattgttttcatctcacaaattttgctgtgttgatgtcagttacgcatgcaacgaggaacataacggggcatcacgaagaaacaatgtcattgatcacacaaatctgcatttgtatttcattaatggcattggctatgtcattcatcactttctgttctgtgaggactttgcaatcagcaagaaacacaacacacaagcatttagcatttgctttgttctttgcacaattgctgtttctggctggaattgacaagaccttcaatattattgcttgcagacttattggaatggcactgcactacttattccttgtcgtgttctccctcatgggaatggaaggctttgttttatatacaatgttggtcagagtctatacaaggaatggaggataccagaataataaattgctcattgcatgttggggtaagcacttgtatttcatcattctatctttgactcgattgagaggcccggtttgctctctaatccaatgtttcacaataagtctctttctgtagtgatttccatcacataccagtcatgaatacctctatcaaaaactatatctgaaatcaatcctaatatcctcatatctatccttgaaatttgaagaataagtttttagtttagggggtgctctctcctcgattagtttacctactgagagagctcctccttaagaaattcctccccataca

Transcript

scaffold1.g45.t1

ATAGATCAACCATTTCAGAACAAACTTCTTTACTGTTGAATAAAGAATGTGAATTGTTTTATGATCTTGCAATATTGACAATTGCAAATGCAAAACGATTTATTTTTTCGTAGATTTATGAGGAATGATTGGTCGTTATCTGATCCAAACGCAAACATCTGCTGATTTAGAAAGTCTGCCAAGCTCGAGATTTTCTCCTGTTTTATCAAATCGATCCAGCTGCTCAGGGCATCGAAGATTGACGCTTGCTTGCTATCTATGCGAAAGTACAGAAGAGGCCAGTGGTGTTTGTGATGGCTGACTCAAGACTCACCTTGCTGTTTTGCACGTGTCTCATTCTGGCTTTGAACCCACTGCTTGCTAAAAGAGATTCGGTGTACAAAGATGCATCGCATTACTGGCCGTTGGATTACATAGTCCAATATAAGGATGCAGTTAGCCTCTCAGAGGCTACCAGTTATGGTCCCAAAGGTGTCTTTAAAGGAGATGGACATGGGTTCATGGAGATAACACTTGGAACTTCAGCTCTTCGTCTTGGAGAATATACAGAAAGTTGTTTGATGAAGCTGCAGAACTGCCGATCTGGTCTGAGTTTTACATTCTGGTTTAACGTGCAGGATGCAGAACAAAGTGTTAATACGGTGACTTTGTTCAATATTAAGTCGAGTGAAAGTGATATTTTGAAGATTTCATTCTTGAAAGGCCAGAAACCATCAATGATTTTCACAATAAACGATGGAAGCACCTCTCACAAAGCTAAATTCACATTTTCCGTAAATAGTTGGTCTCATGTTAGCGTTATCTTCAGTGCACCAGGAAATTTACAGATCATGGTAAATGGTCAGCGGATATTGGTCAGAAGGAACAGAATATCAAGCATCGGAACTGCTAAAAAAGTCACTTTTATGATTGGTTCTTGGCTTCAGCTTGGGAATTATCAAGGGCCTAAAGTATTACTCGGTGAAGTTGCAATTTTTTACAAAAAGCTGAGTGATGCTCAAATAAAGAATATTGTCATGAAGAATTTTTATGAGAAAATCACTTTGGAGAAAGAATGCCAGTCGAACAAAACGTCTCTAGGCGTATCTTGGAAAACACCGTTTGATGATTATGAGCAAATCATTAGTTACGCCATCGTTGTGCGCTCAGATACAACCCTCAAGTACTTTACTGCAAGGAGAAAAGCTACCAAAGCAACACTTACAGAACTGGCTCCCGACACGAAATATGACATAAACATTATTGCAAAAACTCATACTACATATTCGGTTTCAAGCAATATCATCCGTTGTGCGACGAATGCAACAAAGAAATCTTCGAGTAAAGGTGATTTGAAGGTTGCTGCTCTATTTCATAACAAAATTCGTGTCACATGGACAGCTTCGCCAAGCTCTAATGTCAAGCCAGTTGCGTATGGGATATCTTTAACTGGTGATCCTGCATTTTACAGACTGTTTCATTCAAAGAAACCCCTCAATTATACGATCGGCAATCTTAAACCAAAAACTGAGTATTTAATCAAAGTCACAATTTTTTCAAGCTCTGGACTCAAAGTGGAAGAAAAGAAATTCAAAACACCACGAAAAATTGAAATACCAGCAAACCCGGTAAGGTCTCTATCAGCTGCCTCGATATCATGGAACGCAGCAAGCCTCTATTGGATGCCTCCGGTGAATTACAATGATCCAGCCCTTTATTACCAAATAAATTGCATGGCCTGTAAGACGGCCAAGGTAGTTGAAACTACCAAGAATACTATCAGGCTTGATGACTTTGAAGAGAATAAGAAGTATGACATTCAAGTAAAAGTTGGCGCAAAAGGAGTTGGCCTTTATGAAGTTGCGGCCAATTTGAGTTTCAAAACCTTGGTTCGTTTCCCTGCTCCAGTGGCTCTAAACGCGACTTCCATTACATGGGATACGGCCATACTAAAATGGCACCCGGTAAAAAGGACAGAAGACATTGTATACAGGATTGCATACCACAGCGAAAGCAACGCACAACAGATCCTCCACATAAATACGTCTGCAACCCATTTGAAATTGAAAGACCTCAGACAACTTATGGGATATTTTGTGACTGTCCAATCTGGAAATGGGGAACTCTTTGGCGAAGAATCAACCAAGAAAATGTTTTTCATCACGCTAGATCACAATGAATGCATTGATGGAAGTCATTCATGTACGAAGTTTGAACACTGTATCAACACTGAGGGATCATACTCTTGTCCTTGTCGCCAAGGTTACATCAAAGATGACAAAATTTGCAAACCAATGAAGAAAGATGAACCCAAATGCCCAAAAGACTTTGCAAGGAATATTCACTGGAGTGTAACGCAGAATGGGCAGATAGCTCACAGCAATTGCCCGAAGGGAACAAAAGGAATTGCTCGTCGCATTTGCAAGAAGATGAGTGACAAGGAAACAAAATGGATGGACCCTGATCTTAGTGACTGTGTTTCTCTCTGGGTGGACAGCTTTGCCCAGAAGATGCGTGGTAACTCTGAGAACAAGTCCAGTTTGATGAAAACCCTCACAACTGAATATCAAAAGCAAACAAATATTGTTGGAGGCGATATTCAAAATGTCGTTTCGTTAATGAATGATATCGTTGGTATGACCAAAAATACAGATAATGAAAAGATTGACTCCTCAGAGGAAGATTTAAAATCGATTGCAAAGGATCTCTTGTCACTAACGGATAACTTATTGTCTACAAAAAGTTCTTCAACGTGGAATGATCTACCAAAGAATAAGAAAGCAAAAAGTGCTGGTGGAATTTTGAAGACTGTTGAAAATATGGCACGCGTCTTCAGTCAGGCACAAAGAAATTCTACAAACAAGAACATGGCGCTCTCTATCTCGACACCAAATACAGTGATGGAAGTAAGAAGTGCGTCGAGTCCAGCTGCATTAGAATTCACGTCAAGCTCAAATTCACAAGCTGCTGAGAACAGTATTGCAGTTCCTTTTGCTGATAACACTGCCGATTCAGAAGGGCCAAAATCCGTGTACTTTGGCTCATTTCGGAGCATCGAAAGCCTCCTTGGAACTGACATGAGCAGCAAATCACAATCAGATAGCACCGTTGGACTGGCGGCCAAAGATACGAGAGTATCAAACGTCATAGCTGCAACGTTGTTTCCAAATAAAGAGAGAAAATTTGATCAGCCAGTTGTCATCGTTCAGAAATTGCCTAAGCATAACAATACAGCAAATGTGAACTGTGTATTCTGGAAATTCTCAAGCAAAGGTTCTGGAATGTGGTCAGCAAAAGGATGCAAATTACACAGCAGCAACAACACGCATGCGATATGTCATTGTTTTCATCTCACAAATTTTGCTGTGTTGATGTCAGTTACGCATGCAACGAGGAACATAACGGGGCATCACGAAGAAACAATGTCATTGATCACACAAATCTGCATTTGTATTTCATTAATGGCATTGGCTATGTCATTCATCACTTTCTGTTCTGTGAGGACTTTGCAATCAGCAAGAAACACAACACACAAGCATTTAGCATTTGCTTTGTTCTTTGCACAATTGCTGTTTCTGGCTGGAATTGACAAGACCTTCAATATTATTGCTTGCAGACTTATTGGAATGGCACTGCACTACTTATTCCTTGTCGTGTTCTCCCTCATGGGAATGGAAGGCTTTGTTTTATATACAATGTTGGTCAGAGTCTATACAAGGAATGGAGGATACCAGAATAATAAATTGCTCATTGCATGTTGGGGTAAGCACTTGTATTTCATCATTCTATCTTTGACTCGATTGAGAGGCCCGGTTTGCTCTCTAATCCAATGTTTCACAATAAGTCTCTTTCTGTAGTGATTTCCATCACAtaccagtcatgaatacctctatcaaaaactatatctgaaatcaatcctaatatcctcatatctatccttgaaatttgaagaataagtttttagtttagggggtgctctctcctcgattagtttacctactgagagagctcctccttaagaaattcctccccataca

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan
PF16489 all species →	GAIN	GPCR-Autoproteolysis INducing (GAIN) domain	Domain	Interproscan
PF01825 all species →	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR000203 all species →	Conserved_site	GPS motif	Interproscan
IPR001879 all species →	Domain	GPCR, family 2, extracellular hormone receptor domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan
IPR036445 all species →	Homologous_superfamily	GPCR family 2, extracellular hormone receptor domain superfamily	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR032471 all species →	Domain	GAIN domain, N-terminal	Interproscan
IPR046338 all species →	Homologous_superfamily	GAIN domain superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12011 all species →	ADHESION G-PROTEIN COUPLED RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007189 all species →	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold1.g45.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.