Gene detail

Detailed information of scaffold1.g5.t4 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1:51203...75984
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1.g5.t4

tcctatgattgaccaatcaaatgccgtcgttgtgtttacttccgcgtttcgcagcaaaacttaggccattttcggccgttttgaccactctccggaaaaaatcattgcacgatcggataaatcgaatttcgtcaaaatttcaattggagaagattctccatgctttggaccataagtgttttcggtatggctttgcgatcactaaaagtagcagaattgtggcatttttaagctcactgcagtcattcatcggttacagactctatgattagcaaaaagaagagtagaaaattgaaaacctgaaaaagaactagtgcatacacatacctcagatggatttaataacaaacatccactttttctgccgcgatctacagcgagtttcaccagcaaataacacagtcaacaaaaataggcgcgagaacttgaatgatcagctacatgccatcgtcgagtgagaacagcatccgattccaatgaacagaaatatgaataaatcaacggtgaataacgaatacatgaacttgccatatgctgaagattacgggagtagctggtttgtactgtatcatattattacgaagatgagcagtgatggagactgggaaaaagtcaagaatgaaaagggcatcccttattacatgaaccacaaaacagagcaaacattttggaatcatccaacaataacagttcttgaaaagagaatataatgaaaagggcatcccttattacatgaaccacaaaacagagcaaacattttggaatcatccaacaataacagttcttgaaaagagaatattgtcactaagcaagatcaagtatgctgcatataggaccgcactgaagctaagagcaatccagaaagcaacatgcagttgtaacgttcaactatctacaatcagggaatactttgagatgcaaggaatggacagatcattggacctcagggagaccattactgcgcatgaattaagcaacattttagatgaaatatttttgtatgaaatcaaactagggggtagaattgcaaaggaccctcgtctagcttctgaactgatgctaaactggttgctgaatgtgcatgacagctctcgcaagggtacaatgcgatttttgtcggtaaaactttcaatgatcatcgtttcatctggatcgccaagacagaaatatcattgtatattttcacagattcagaatcgaaatggttttgtagacagagagagaattggattctttcttcaggcatgcttaaagattcctaagtaccttaatgaagtcaaatcatttggagaaagtagcattgaaccgtcaatcaagagcttttttaagcaggctatcgattcaaggcaggctgtcagcagtgattttgtagagtggatgctagcagaaccccaaccgcttgtatggataccaacgttatatcgattagctgcttctgaaactggttgaaatttgatactattgaatggaaggttgtgatgcgttaacgcacgctaactgacgccaatccatgctacagcaaattgcgtttataatcttggctggtcaaatatcagaaatcttgtaagaaaagagacagccacgctaacttataaatctttgaattcgcttgccccagactacttgaacaaattattcataaaatgttcggacggtagagagcggtttctgcgctcatcagatgtaaaatgaaatgaaaaatgaaaagcggtataagattccccgggggtatcctcgcatagtacttacaacgaccagttttcatgcctatcttgagaatctgttagaaaattataaagatttaaaaaaaaggtaattttgtcattttcttgtgcacccgtgccagttgatcaattatgacgccataactatttttagaatttttttgnaccgttcctaaaaactatcaatggccaaaaggctttttcttatcgtggtgcaaaactgtggaacaacctagaaagagagacaaaattggcaccctccctaaaaaccttcaaaggacaactatagacagggacaacttttattttattaattagtcttagttttgtataatattgtaaattaggcatgtaaatttcttttgttcttagttttagtggttaggttttttctttttgttgaaacaggtcaggttgaaaaacatatttatatatgaatcctattaacctgtataaatattgtaaaaatga

Transcript

scaffold1.g5.t4

tcctatgattgaccaatcaaatgccgtcgttgtgtttacttccgcgtttcgcagcaaaacttaggccattttcggccgttttgaccactctccggaaaaaatcattgcacgatcggataaatcgaatttcgtcaaaatttcaattggagaagattctccatgctttggaccataagtgttttcggtatggctttgcgatcactaaaagtagcagaattgtggcatttttaagctcactgcagtcattcatcggttacagactctatgattagcaaaaagaagagtagaaaattgaaaacctgaaaaagaactagtgcatacacatacctcagatggatttaataacaaacatccactttttctgccgcgatctacagcgagtttcaccagcaaataacacagtcaacaaaaataggcgcgagaacttgaatgatcagctacatgccatcgtcgagtgagaacagcatccgattccaatgaacagaaatatgaataaatcaacggtgaataacgaatacatgaacttgccatatgctgaagattacgggagtagctGGTTTGTACTGTATCATATTATTACGAAGATGAGCAGTGATGGAGACTGGGAAAAAGTCAAGAATGAAAAGGGCATCCCTTATTACATGAACCACAAAACAGAGCAAACATTTTGGAATCATCCAACAATAACAGTTCTTGAAAAGAGAATATAATGAAAAGGGCATCCCTTATTACATGAACCACAAAACAGAGCAAACATTTTGGAATCATCCAACAATAACAGTTCTTGAAAAGAGAATATTGTCACTAAGCAAGATCAAGTATGCTGCATATAGGACCGCACTGAAGCTAAGAGCAATCCAGAAAGCAACATGCAGTTGTAACGTTCAACTATCTACAATCAGGGAATACTTTGAGATGCAAGGAATGGACAGATCATTGGACCTCAGGGAGACCATTACTGCGCATGAATTAAGCAACATTTTAGATGAAATATTTTTGTATGAAATCAAACTAGGGGGTAGAATTGCAAAGGACCCTCGTCTAGCTTCTGAACTGATGCTAAACTGGTTGCTGAATGTGCATGACAGCTCTCGCAAGGGTACAATGCGATTTTTGTCGGTAAAACTTTCAATGATCATCGTTTCATCTGGATCGCCAAGACAGAAATATCATTGTATATTTTCACAGATTCAGAATCGAAATGGTTTTGTAGACAGAGAGAGAATTGGATTCTTTCTTCAGGCATGCTTAAAGATTCCTAAGTACCTTAATGAAGTCAAATCATTTGGAGAAAGTAGCATTGAACCGTCAATCAAGAGCTTTTTTAAGCAGGCTATCGATTCAAGGCAGGCTGTCAGCAGTGATTTTGTAGAGTGGATGCTAGCAGAACCCCAACCGCTTGTATGGATACCAACGTTATATCGATTAGCTGCTTCTGAAACTGGTTGAAATTTGATACTATTGAATGGAAGGTTGTGATGCGTTAACGCACGCTAACTGACGCCAATCCATGCTACAGCAAATTGCGTTTATaatcttggctggtcaaatatcagaaatcttgtaagaaaagagacagccacgctaacttataaatctttgaattcgcttgccccagactacttgaacaaattattcataaaatgttcggacggtagagagcggtttctgcgctcatcagaTGTAAAATGAAATGAAAAATGAAAAGCGGTATAAGATTCCCCGGGGGTATCCTCGCATAGTACTTACAACGACCAGTTTTCATGCCTATCTTGAGAATCTGTTAGAAAATTATAAAGATTTAAAAAAAAGGTAATTTTGTCATTTTCTTGTGCACCCGTGCCAGTTGATCAATTATGACGCCATAACTATTTTTAGAATTTTTTTGNaccgttcctaaaaactatcaatggccaaaaggctttttcttatcgtggtgcaaaactgtggaacaacctagaaagagagacaaaattggcaccctccctaaaaaccttcaaaggacaactatagacagggacaacttttattttattaattagtcttagttttgtataatattgtaaattaggcatgtaaatttcttttgttcttagttttagtggttaggttttttctttttgttgaaacaggtcaggttgaaaaacatatttatatatgaatcctattaacctgtataaatattgtaaaaatga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09069 all species →	EF-hand_3	EF-hand	Domain	Interproscan
PF09068 all species →	EF-hand_2	EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015154 all species →	Domain	EF-hand domain, type 2	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR050774 all species →	Family	KCMF1 and Dystrophin	Interproscan
IPR015153 all species →	Domain	EF-hand domain, type 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12268 all species →	E3 UBIQUITIN-PROTEIN LIGASE KCMF1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0099536 all species →	Biological Process	synaptic signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold1.g5.t4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.