Gene detail

Detailed information of scaffold10.g7.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold10:21836...23204
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03315 all species →	SDH_beta	Serine dehydratase beta chain	Family	Interproscan
PF03313 all species →	SDH_alpha	Serine dehydratase alpha chain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051318 all species →	Family	Iron-Sulfur Dependent L-Serine Dehydratase	Interproscan
IPR029009 all species →	Homologous_superfamily	Allosteric substrate binding domain superfamily	Interproscan
IPR005131 all species →	Domain	Serine dehydratase beta chain	Interproscan
IPR004644 all species →	Family	Iron-sulphur-dependent L-serine dehydratase single chain form	Interproscan
IPR005130 all species →	Domain	Serine dehydratase-like, alpha subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30182 all species →	L-SERINE DEHYDRATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003941 all species →	Molecular Function	L-serine ammonia-lyase activity	Interproscan
GO:0006094 all species →	Biological Process	gluconeogenesis	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01752	E4.3.1.17, sdaA, sdaB, tdcG; L-serine dehydratase	EC:4.3.1.17	Cysteine and methionine metabolism	ko00270	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.