Gene detail

Detailed information of scaffold10.g98.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold10:388969...396644
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold10.g98.t1

gtactgttgatgtttgttccataaacatgccatctattagcttgccgagaattggctcaatattgtggtgtgatttttgcattttagctgtcagtatcgggtctttttgacctttgtttgccgccagtattgctgcctgtcagcgatacgctcagagccacgagaacgagagtttctaaatgagtgtgaatttgtcccatgtatctgcgactaccaagacgccagtttctgatgtgtccgctaaagcgtctgcagagagcactgaaagcaagggatttttagaaacgttaaccgatgcgtttgctggtaaacaaaagcccgaaaaagtagcaacagaatcgacagtggttgaagaaaaagaaagagcggatgtaggcagtacttcttctgctaacgtctcggacgaattgttggcgcaagaaagccaagaatccgtcagtgacgggccccatgattttgatgaaacatcagcaaacaaaccgaatgcaaccctaagtgacaaggcaagtttacaaaaggcgagtaacagcacacctttgaagcctgatgttgaagctatcgaaaaagtgaaatcaacatcaattgatacgagtaacccatcaaatacaatggacgtaaaaagcacgatgggcgaaggacaacagcttcttggtcgaattgaacaagcgaatcaaaccctgaatgcgagtaatgcatccatcgatagtggcaaagttttgcctcagagagcaaatttagtgcattcgttccacgagcaagcaaccgtttcgacaaaccttgatgagctggctttgaatgaaacgccattagttcattcgcttgaacaagcacagatgatcccaggacaagacttagagccaattttagataagaatggtcaacctatcgatgtcgacaaactctcgtctgagtttgctgcttggcaagagctagcgaaacaagccagccatccgacgactaagagcgcagtcagtggtgaagtagctaatgagctgtcgccgttgttaacagacgttgatggttccaacatcgacgcgcttccacgagtctccttggatgaacttgaagttatagataccaagttggcgcaaggaaaaccactgactcagcaagaagctcagatcattgaagggttgaaacaaggaacgatcacggcggatattcctgagcaagaccttgcccaatttgttgcgctccctaatgacattaaacagattctcgcagagcaacaagtacaacataatttaactcgccaggctggagctatggcagtgtctcagcaaatccagcatgcagcggctcaagccctccagccacaagctactcatagtggagataaagtagcattatcttcaacgcccgatacgttgatagccgcgcaagtgccgacgtcgcttcaaggtgtgaaagacggagagattagccagaaagtgatgaacgcagcattggcgactggtgcgctaaaggcgcctgcggatagacaagataagccggatctccaacacggtttcgctggacagcttcaggctatggcaggtcagcaaggaattaatgtacagcaacaagcgcgtattgatgctgcacaacaagctcagcttccgttgcaactaactaaagagctagccaacgagcaagttgcggaaaaagtgcaaatgatgatgtcgaagaatctgaaaaatctcgatattcgtcttgatccaccagagttaggtcgtatgcaaattcgtatgaccatgaataatgacgttgccaatgtacattttacagtgaacaacccgcaagctcgtgacattattgaacagacgctccctcgtttgagagaaatgctagcgcaacaaggtatgcagctggctgattcttccgtccagcaacaaaacagcgggcaacagcaagtattactacttggtggcggggcagcggcattttttctaatgggctctgatgaacctgctcaggctgaatcgtctcaacaggctcaagtgaaggcatcggatgctgcgcccatcgcgtatgtgaatcttcctcaggcatttgtatttaacgttactggggatagccgcgatagccaagacgaaattgatgcgctattgcatggggttgacgatgttgatgacgtcgatgaaccgatagaaaacgacactgagggtgccgtcaattttgatttctcgtcgcaagacaggatcgtacgtggtcgaatgccgacgctcgaacttatcaacgagcgctttgcacggcacatgcgtattagtctgtttaatatgctgcgtaaaacggcagaggtgtcgatcaatggcgtgcagatgatgaagtttggtgaataccagaacacattgtacgtgccaaccagtttgaacatggtgcgttttcgtccgttaaaaggcactgcgttgatcaccatggaggctcgtttagtctttattctggtagaaaacttctttggcggtgatggtcgattccacgccaaaatcgaaggccgtgaatttaccccaacggaacgccgcatcattcagttgttactgaaaattgtatttgaagattataaagaagcgtggtcgccagtgatgggggtagagttcgaatatctcgactctgaagtaaacccaagtatggcaaacattgtcagcccgacagaagtgattgtcgtgagttccttccatatagaagttgacggcggtggcggcgattttcatgtcgttatgccttactccatggttgagcctatccgtgaactattggatgcaggtgttcagtccgacaagatggaaacggacgttcgctggagctcagcactacgtgaagagatcatggattgtccggttaacttccgcgtgaacttgctcgaaaaagacatttctttgcgtgatctcatggagctgcaaccgggcgacatcatcccgattgaaatgccagaacatgcgacgatgtttgtagaagacctaccgacctatcgcgtaaaaatgggtcgttcggaagacaaattagcggtgcaaatttctgaggaaattgagcgcccacatgtcgtcaaaacagatttagctttcttaggcgtaacacaggatagaaaaatggaaccaagtgacgatcaaaagctagcagacgaatgggcagccgctcttggcgaagacccgtctgccccttctgtagacgtagatgaagtattggctgcgccactggaagagctaaaagacacttcaagcccaattagcgaagatgagcgtcgtaaactcgacactattatggatatcccggtgacgatttcgatggaagtcggtcgttctcaaattagcattcggaacctgttgcagcttaaccaaggttcggttgttgagttggatcgtctagccgaggagtcagcgctgccagataacttagccgatggaagtggtgttacagttcaggctatgcaaagtgatactggtgctagccgtgctatgtccgtttctagtggcggtggtattccagcattcaccatgaccacgaaccctgatggcagtgaagactactcggttacactacaaattttagcgttaatgaccatgcttggcttcttgcctgccatggtgattctgatgacctcgttcactcgaattgtggtggtgatgtcgatattgcgtcaggcaatgggtttgcaacaaacgccttctaatcaggttattattggtattgcgctgtttttgaccttttttgttatgtctcctgtcctgaacgaaatcaacgacaaagctgttcagccttatttgaacgagcaagttacggcgcgagaagcgtttgatgctgcacaagcgccaatgaaagcatttatgcttaagcagacccgaatcaaagatttggagacgttcgtaaccatgtcaggagagcaagtcgagaatccagaagatgtgtcgatggcggtgttgattccggcttttatcacctcagagctaaaaactgcattccaaattggctttatgctcttcttgccgtttttgatcattgaccttgtagtcgcttcggtactgatggcaatggatttggcagaatcagacggtcaggaacgcaccgaagaagccacgccccgacggttacaacaagccagagaaaaggggcaggtcgctcgatctaaagagctcgcatcagcatctgtgctgatcgttggcgccatttcattgatgtggtttggagaggcgttagcacgttcattgttttccatcatgagccgtttatttgatcttcaacgagaagagattttcgatactgcaaaactgtttgatatcgctttgggcgcgatgagtgatttgttgttcccactatttttggtgttagcgacattgtttaccgccgccatgattggagcagcaggtgtgggaggaatcagtttttctgcccaagcggccatgcccaagctgtcgaaaatgaatccgcttagcggcttaaagcgaatggttggcatgcaaagctgggtagagttgatcaaatcaatccttaaagtggttctggtcactggtgtcgccatctatttgatccaagcatcgcaggccgatctgattcaattgagcatggatgtgtatccgcaaaacatcttccatgctttagatattttgctgagctttattttgctgatcagttgctcgctattgattgtggttgccatcgatattccatttcaaatctggcagcacgctgatcagttaaaaatgacgaagcaagaagtcaaagacgaatacaaagagactgaaggtaagccggaagtgaaaggccgtattcgtatgttgcaaagggaagcggctcaacgtcgaatgatggcggatgttcctcaagctgatgttattgttactaacccagagcacttctcggtagcgcttcgttataaacagaagacagaccgtgcgccagtcgtgatcgctaaaggtactgaccacatggcgatgaagattcgagaagtcgcccgcgaacatgacattacgattgtgcccgcaccacctttggctcgtgcgttgtaccacacgacagagctcgagcaagagatccccgatgggttatttactgccgtcgctcaggttttggcatttgtattccaattgaagcaataccgaaaacgaggtggacagcgcccgaaaattcaagattatgatttgccaatcccgcccgagcaccgtcattgatacgaaaagcggtaaagccttaaaaaagctcgtttgatcaa

Transcript

scaffold10.g98.t1

GTACTGTTGATGTTTGTTCCATAAACATGCCATCTATTAGCTTGCCGAGAATTGGCTCAATATTGTGGTGTGATTTTTGCATTTTAGCTGTCAGTATCGGGTCTTTTTGACCTTTGTTTGCCGCCAGTATTGCTGCCTGTCAGCGATACGCTCAGAGCCACGAGAACGAGAGTTTCTAAATGAGTGTGAATTTGTCCCATGTATCTGCGACTACCAAGACGCCAGTTTCTGATGTGTCCGCTAAAGCGTCTGCAGAGAGCACTGAAAGCAAGGGATTTTTAGAAACGTTAACCGATGCGTTTGCTGGTAAACAAAAGCCCGAAAAAGTAGCAACAGAATCGACAGTGGTTGAAGAAAAAGAAAGAGCGGATGTAGGCAGTACTTCTTCTGCTAACGTCTCGGACGAATTGTTGGCGCAAGAAAGCCAAGAATCCGTCAGTGACGGGCCCCATGATTTTGATGAAACATCAGCAAACAAACCGAATGCAACCCTAAGTGACAAGGCAAGTTTACAAAAGGCGAGTAACAGCACACCTTTGAAGCCTGATGTTGAAGCTATCGAAAAAGTGAAATCAACATCAATTGATACGAGTAACCCATCAAATACAATGGACGTAAAAAGCACGATGGGCGAAGGACAACAGCTTCTTGGTCGAATTGAACAAGCGAATCAAACCCTGAATGCGAGTAATGCATCCATCGATAGTGGCAAAGTTTTGCCTCAGAGAGCAAATTTAGTGCATTCGTTCCACGAGCAAGCAACCGTTTCGACAAACCTTGATGAGCTGGCTTTGAATGAAACGCCATTAGTTCATTCGCTTGAACAAGCACAGATGATCCCAGGACAAGACTTAGAGCCAATTTTAGATAAGAATGGTCAACCTATCGATGTCGACAAACTCTCGTCTGAGTTTGCTGCTTGGCAAGAGCTAGCGAAACAAGCCAGCCATCCGACGACTAAGAGCGCAGTCAGTGGTGAAGTAGCTAATGAGCTGTCGCCGTTGTTAACAGACGTTGATGGTTCCAACATCGACGCGCTTCCACGAGTCTCCTTGGATGAACTTGAAGTTATAGATACCAAGTTGGCGCAAGGAAAACCACTGACTCAGCAAGAAGCTCAGATCATTGAAGGGTTGAAACAAGGAACGATCACGGCGGATATTCCTGAGCAAGACCTTGCCCAATTTGTTGCGCTCCCTAATGACATTAAACAGATTCTCGCAGAGCAACAAGTACAACATAATTTAACTCGCCAGGCTGGAGCTATGGCAGTGTCTCAGCAAATCCAGCATGCAGCGGCTCAAGCCCTCCAGCCACAAGCTACTCATAGTGGAGATAAAGTAGCATTATCTTCAACGCCCGATACGTTGATAGCCGCGCAAGTGCCGACGTCGCTTCAAGGTGTGAAAGACGGAGAGATTAGCCAGAAAGTGATGAACGCAGCATTGGCGACTGGTGCGCTAAAGGCGCCTGCGGATAGACAAGATAAGCCGGATCTCCAACACGGTTTCGCTGGACAGCTTCAGGCTATGGCAGGTCAGCAAGGAATTAATGTACAGCAACAAGCGCGTATTGATGCTGCACAACAAGCTCAGCTTCCGTTGCAACTAACTAAAGAGCTAGCCAACGAGCAAGTTGCGGAAAAAGTGCAAATGATGATGTCGAAGAATCTGAAAAATCTCGATATTCGTCTTGATCCACCAGAGTTAGGTCGTATGCAAATTCGTATGACCATGAATAATGACGTTGCCAATGTACATTTTACAGTGAACAACCCGCAAGCTCGTGACATTATTGAACAGACGCTCCCTCGTTTGAGAGAAATGCTAGCGCAACAAGGTATGCAGCTGGCTGATTCTTCCGTCCAGCAACAAAACAGCGGGCAACAGCAAGTATTACTACTTGGTGGCGGGGCAGCGGCATTTTTTCTAATGGGCTCTGATGAACCTGCTCAGGCTGAATCGTCTCAACAGGCTCAAGTGAAGGCATCGGATGCTGCGCCCATCGCGTATGTGAATCTTCCTCAGGCATTTGTATTTAACGTTACTGGGGATAGCCGCGATAGCCAAGACGAAATTGATGCGCTATTGCATGGGGTTGACGATGTTGATGACGTCGATGAACCGATAGAAAACGACACTGAGGGTGCCGTCAATTTTGATTTCTCGTCGCAAGACAGGATCGTACGTGGTCGAATGCCGACGCTCGAACTTATCAACGAGCGCTTTGCACGGCACATGCGTATTAGTCTGTTTAATATGCTGCGTAAAACGGCAGAGGTGTCGATCAATGGCGTGCAGATGATGAAGTTTGGTGAATACCAGAACACATTGTACGTGCCAACCAGTTTGAACATGGTGCGTTTTCGTCCGTTAAAAGGCACTGCGTTGATCACCATGGAGGCTCGTTTAGTCTTTATTCTGGTAGAAAACTTCTTTGGCGGTGATGGTCGATTCCACGCCAAAATCGAAGGCCGTGAATTTACCCCAACGGAACGCCGCATCATTCAGTTGTTACTGAAAATTGTATTTGAAGATTATAAAGAAGCGTGGTCGCCAGTGATGGGGGTAGAGTTCGAATATCTCGACTCTGAAGTAAACCCAAGTATGGCAAACATTGTCAGCCCGACAGAAGTGATTGTCGTGAGTTCCTTCCATATAGAAGTTGACGGCGGTGGCGGCGATTTTCATGTCGTTATGCCTTACTCCATGGTTGAGCCTATCCGTGAACTATTGGATGCAGGTGTTCAGTCCGACAAGATGGAAACGGACGTTCGCTGGAGCTCAGCACTACGTGAAGAGATCATGGATTGTCCGGTTAACTTCCGCGTGAACTTGCTCGAAAAAGACATTTCTTTGCGTGATCTCATGGAGCTGCAACCGGGCGACATCATCCCGATTGAAATGCCAGAACATGCGACGATGTTTGTAGAAGACCTACCGACCTATCGCGTAAAAATGGGTCGTTCGGAAGACAAATTAGCGGTGCAAATTTCTGAGGAAATTGAGCGCCCACATGTCGTCAAAACAGATTTAGCTTTCTTAGGCGTAACACAGGATAGAAAAATGGAACCAAGTGACGATCAAAAGCTAGCAGACGAATGGGCAGCCGCTCTTGGCGAAGACCCGTCTGCCCCTTCTGTAGACGTAGATGAAGTATTGGCTGCGCCACTGGAAGAGCTAAAAGACACTTCAAGCCCAATTAGCGAAGATGAGCGTCGTAAACTCGACACTATTATGGATATCCCGGTGACGATTTCGATGGAAGTCGGTCGTTCTCAAATTAGCATTCGGAACCTGTTGCAGCTTAACCAAGGTTCGGTTGTTGAGTTGGATCGTCTAGCCGAGGAGTCAGCGCTGCCAGATAACTTAGCCGATGGAAGTGGTGTTACAGTTCAGGCTATGCAAAGTGATACTGGTGCTAGCCGTGCTATGTCCGTTTCTAGTGGCGGTGGTATTCCAGCATTCACCATGACCACGAACCCTGATGGCAGTGAAGACTACTCGGTTACACTACAAATTTTAGCGTTAATGACCATGCTTGGCTTCTTGCCTGCCATGGTGATTCTGATGACCTCGTTCACTCGAATTGTGGTGGTGATGTCGATATTGCGTCAGGCAATGGGTTTGCAACAAACGCCTTCTAATCAGGTTATTATTGGTATTGCGCTGTTTTTGACCTTTTTTGTTATGTCTCCTGTCCTGAACGAAATCAACGACAAAGCTGTTCAGCCTTATTTGAACGAGCAAGTTACGGCGCGAGAAGCGTTTGATGCTGCACAAGCGCCAATGAAAGCATTTATGCTTAAGCAGACCCGAATCAAAGATTTGGAGACGTTCGTAACCATGTCAGGAGAGCAAGTCGAGAATCCAGAAGATGTGTCGATGGCGGTGTTGATTCCGGCTTTTATCACCTCAGAGCTAAAAACTGCATTCCAAATTGGCTTTATGCTCTTCTTGCCGTTTTTGATCATTGACCTTGTAGTCGCTTCGGTACTGATGGCAATGGATTTGGCAGAATCAGACGGTCAGGAACGCACCGAAGAAGCCACGCCCCGACGGTTACAACAAGCCAGAGAAAAGGGGCAGGTCGCTCGATCTAAAGAGCTCGCATCAGCATCTGTGCTGATCGTTGGCGCCATTTCATTGATGTGGTTTGGAGAGGCGTTAGCACGTTCATTGTTTTCCATCATGAGCCGTTTATTTGATCTTCAACGAGAAGAGATTTTCGATACTGCAAAACTGTTTGATATCGCTTTGGGCGCGATGAGTGATTTGTTGTTCCCACTATTTTTGGTGTTAGCGACATTGTTTACCGCCGCCATGATTGGAGCAGCAGGTGTGGGAGGAATCAGTTTTTCTGCCCAAGCGGCCATGCCCAAGCTGTCGAAAATGAATCCGCTTAGCGGCTTAAAGCGAATGGTTGGCATGCAAAGCTGGGTAGAGTTGATCAAATCAATCCTTAAAGTGGTTCTGGTCACTGGTGTCGCCATCTATTTGATCCAAGCATCGCAGGCCGATCTGATTCAATTGAGCATGGATGTGTATCCGCAAAACATCTTCCATGCTTTAGATATTTTGCTGAGCTTTATTTTGCTGATCAGTTGCTCGCTATTGATTGTGGTTGCCATCGATATTCCATTTCAAATCTGGCAGCACGCTGATCAGTTAAAAATGACGAAGCAAGAAGTCAAAGACGAATACAAAGAGACTGAAGGTAAGCCGGAAGTGAAAGGCCGTATTCGTATGTTGCAAAGGGAAGCGGCTCAACGTCGAATGATGGCGGATGTTCCTCAAGCTGATGTTATTGTTACTAACCCAGAGCACTTCTCGGTAGCGCTTCGTTATAAACAGAAGACAGACCGTGCGCCAGTCGTGATCGCTAAAGGTACTGACCACATGGCGATGAAGATTCGAGAAGTCGCCCGCGAACATGACATTACGATTGTGCCCGCACCACCTTTGGCTCGTGCGTTGTACCACACGACAGAGCTCGAGCAAGAGATCCCCGATGGGTTATTTACTGCCGTCGCTCAGGTTTTGGCATTTGTATTCCAATTGAAGCAATACCGAAAACGAGGTGGACAGCGCCCGAAAATTCAAGATTATGATTTGCCAATCCCGCCCGAGCACCGTCATTGATACGAAAAGCGGTAAAGCCTTAAAAAAGCTCGTTTGATCAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01312 all species →	Bac_export_2	FlhB HrpN YscU SpaS Family	Family	Interproscan
PF02154 all species →	FliM	Flagellar motor switch protein FliM	Family	Interproscan
PF02120 all species →	Flg_hook	Flagellar hook-length control protein FliK	Domain	Interproscan
PF00813 all species →	FliP	FliP family	Family	Interproscan
PF01052 all species →	FliMN_C	Type III flagellar switch regulator (C-ring) FliN C-term	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006135 all species →	Family	Type III secretion system substrate exporter	Interproscan
IPR028976 all species →	Homologous_superfamily	CheC-like superfamily	Interproscan
IPR029025 all species →	Homologous_superfamily	Type III secretion system substrate exporter, C-terminal	Interproscan
IPR001689 all species →	Family	Flagellar motor switch protein FliM	Interproscan
IPR005838 all species →	Family	Type III secretion system inner membrane P protein	Interproscan
IPR005837 all species →	Family	Flagellar transport protein FliP	Interproscan
IPR038610 all species →	Homologous_superfamily	FliK-like, C-terminal domain superfamily	Interproscan
IPR036429 all species →	Homologous_superfamily	SpoA-like superfamily	Interproscan
IPR006136 all species →	Family	Flagellar biosynthetic protein FlhB	Interproscan
IPR021136 all species →	Domain	Flagellar hook-length control protein-like, C-terminal	Interproscan
IPR001543 all species →	Domain	Flagellar motor switch protein FliN-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30531 all species →	FLAGELLAR BIOSYNTHETIC PROTEIN FLHB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0009306 all species →	Biological Process	protein secretion	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0009425 all species →	Cellular Component	bacterial-type flagellum basal body	Interproscan
GO:0071973 all species →	Biological Process	bacterial-type flagellum-dependent cell motility	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0044780 all species →	Biological Process	bacterial-type flagellum assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold10.g98.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.