Gene detail

Detailed information of scaffold1003.g7.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1003:38163...63684
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1003.g7.t1

tggtttcccataacgccaaaggctccctaagaatgtcactagcaggcctgtaatatttccataccatttgtgaggaggtctgactaaacctcaagaaggaacctggttgatatattgatatattaacactaagctcacaatttttctttatagatatgtcttctcagcaatatacactgttgaaatgttgctgaagatcatcgcaaaaggatttgtgttgcacagttatgcatatcttcgagatccatggaattggctagattttgtagttgtttgtttaggttatataactttgacaccgtatgtatcaaatttcacgggtattaggacatttcgagttctcagagctttaagaacaatttcagccgttgaaggcctaaagacaatggtcaatgcactactaaagtcaatgagactcttatcagacgttctagcacttacaatgttttttatttgtgtttttgcactacttgggttgcagttattctctgggtatttacggaacaagtgtgttctaacaccacctagcaatatgtccataccatactcgatgtatatagcaaataaagacaactggttatctccaaatgtcacaaaagtttgtggaaatatctcgactagcaaccaatgtccaacaaattacacgtgtcttccggatgtgggtgacaatccaaattatggttatacgagttttgatcattttggatgggcattgctaacatcagttcaacttgtcaccatggattactgggaaaatgcttattttcatgtcatctcatctgctggttcatggtgtgttttttacttcatgatcgtcgtcttttttggatcattttatctgatcaacctggtgctagctgttgttgcattgtcatatgaacaagaagctgaaaatattgcaaacagggagaaatattacgaacagctcaaatccatcgcttcatcctattcgcttcacaataaattcgttccggtgttgcttttcgacttaccgagtccggtcatacgaacaaccgatcggccaccagatgttgtcgtattcgataaaacccagcggactctcatcagaccatttgggaggcggcgtcgtacagggcaaccgattggaccacaacatgcctttcaatcagccattcatccatcatcggacccgacactgatagctggatcaagtgaaggaaagaatattgttgcatcaaatggacatcaaaatgtaccaaagcaaggctcttcttcgtcatcgccagagaagaatttctcttcaactgaatctgaccaaacatcgtggagaccatatcgagatcttgatgatgatgagctgaccacgtggaataagattcgattgagaatattctatgttgtttcaaatgcactgtttgaattcgccgttacagttttcatcttcctgaatacattgatcttgtcattggaatatcatggaatgaaccccttcttcaagtcagcattacttactctcaatcacgtttttacgtcggtgtttctaactgagatgattctgaaacttattgcactgggaataaacagatatatagcaagccggtggaacttatttgatggcttcgttgtcattattagcatgattgatctgatcgttgactttgcaacaaagaaagacaatagtacgctgagtatcctgcgatcttttagactgctacgagtgctgaaactggcccaatcatggtcaacaatgaggagtttactcggtgcaatagcccgtagtataaacgcaatgggacatttgacacttatattagccatcattatctacatgtttgcattggttggaattcagctgtttggtagcaaatacactcctgataaatttgaatcaggggagacccctcgatggaatttcaaagactttccccactccttcctgatgttgttccgcattttgtgcggagaatggattgagcctctttatgagtgcatgaaagcaacctcgacatggtcaattgcttttttcatgcctgcattggtcgttggaaactttctagtattgaacttgtttcttgcattattgctgagctcccttgccgatgaagcttttgaacaggaattgaagaggcgagacaaacaacgcagaaaccaactgagaagactgaaaaatattctgacacttcaaagtgtgttgaagaaaattggagcgaagaacgccccagacccaccacagccaccgcaagaaaatggaacaccgttgaataatacaaagtttcttggcgtcattgatcaagtggcacggaggcaatcaatgcgccataatgatgatgaacggaagagaatcacgttggcactggcagaagaaaatagacaaaggaactcgacttcattacacccaataaaagaagacccttcaaataccaatgaagaaaaagacgaagagtcgatagatcctaaaccatgtttcccgtgcatcccatgccttcccaatttgtcagatccaagacccggttgttggggtaaaaggcaaaaagaatttctcaaagtgcgaatagttttcaggaagattgtcgagaataaatggtttgataatggaatattaatactgattgtcgcgagcagctctgttttggtctttgaagatatccatctgccaagcaagccaatgctggagacatttctcgagggcctaaatatcttcttttgtgtggtatttttcttggaattttgtctgaagattattggatggggtgtttattcatacctcagaaatccatggaattgtctcgatttcttcatcgttgtggtttccatcgcagccgttattagcaattataccagtagtaaaggaaacttgtctgcatttcgatcaattcgcactcttcgagctctgcgaccattgcgagcaatatcaagatgggaaggaatcaggatcgtggtaaacagtttattccaagcaattccaaacatcggaaatgtgttgttggtctgtggtatgttctggcttatattcagtatcatgggtgtgcaattctttggtggattattcttcaaatgtttggacaagtcaggccaagcacttcccgcatcagtggtcccggatagaaactcgtgcatcgcattgaaatataattggcaaaactcaaacgccaattttgataatgcattgaatgggttcttggctttgttgcaagtggcaacattcgaggggtggatggaagtgatgaacgatgccgtggatgcagtaggaattgacatgcagccaaaattcgaagcaaatttctacgcatatttctactttgtagttttcatcataataggatctttcttcgtcctcaatttattcatcagtgttatcattgacaatttctaccgcatgaagaaacggtatgatgatggcggagacttcagtatattccttacaagcaatcaaagaacgtggtttcacacattaagaaaagctgcaaacaaaaaacctaagaagacgctgtacagacccgagataccatggcaagcaaaattatttgatttcattcaaagtgtgaaattcgagacattcatcatggttttgattcttctcaacatgttcttgatgatgatcagccattataaacaatcagaaaccatctccaacgttctcaatatccttttctactgaaattaaattgagcttttcagtgaatacaccttttcaactaagcggcctcgttttggaaattttctaaagttctccaaattgcttcatatgaaatttctgacatcagatctaggttcagcacctaaattttagtctggtttctactttccagaattccagtgttgacaattttgattttatgacgataataaagttgaaaatttataagggatttgaccgtaaataatgactgagggtgtaaagttacaccccgagcaattttcacggtgaattcccttatagattttcgaacttcttatcgtcataagatcaaaatcgcgaacagtaggattatgaaaatttgcatctagactaaattttggctgctgatcccaaattcgtggtcaaaaatgtcgtaggaagaaatttttttaaatttc

Transcript

scaffold1003.g7.t1

TGGTTTCCCATAACGCCAAAGGCTCCCTAAGAATGTCACTAGCAGGCCTGTAATATTTCCATACCATTTGTGAGGAGGTCTGACTAAACCTCAAGAAGGAACCTGGTTGATATATTGATATATTAACACTAAGCTCACAATTTTTCTTTATAGATATGTCTTCTCAGCAATATACACTGTTGAAATGTTGCTGAAGATCATCGCAAAAGGATTTGTGTTGCACAGTTATGCATATCTTCGAGATCCATGGAATTGGCTAGATTTTGTAGTTGTTTGTTTAGGTTATATAACTTTGACACCGTATGTATCAAATTTCACGGGTATTAGGACATTTCGAGTTCTCAGAGCTTTAAGAACAATTTCAGCCGTTGAAGGCCTAAAGACAATGGTCAATGCACTACTAAAGTCAATGAGACTCTTATCAGACGTTCTAGCACTTACAATGTTTTTTATTTGTGTTTTTGCACTACTTGGGTTGCAGTTATTCTCTGGGTATTTACGGAACAAGTGTGTTCTAACACCACCTAGCAATATGTCCATACCATACTCGATGTATATAGCAAATAAAGACAACTGGTTATCTCCAAATGTCACAAAAGTTTGTGGAAATATCTCGACTAGCAACCAATGTCCAACAAATTACACGTGTCTTCCGGATGTGGGTGACAATCCAAATTATGGTTATACGAGTTTTGATCATTTTGGATGGGCATTGCTAACATCAGTTCAACTTGTCACCATGGATTACTGGGAAAATGCTTATTTTCATGTCATCTCATCTGCTGGTTCATGGTGTGTTTTTTACTTCATGATCGTCGTCTTTTTTGGATCATTTTATCTGATCAACCTGGTGCTAGCTGTTGTTGCATTGTCATATGAACAAGAAGCTGAAAATATTGCAAACAGGGAGAAATATTACGAACAGCTCAAATCCATCGCTTCATCCTATTCGCTTCACAATAAATTCGTTCCGGTGTTGCTTTTCGACTTACCGAGTCCGGTCATACGAACAACCGATCGGCCACCAGATGTTGTCGTATTCGATAAAACCCAGCGGACTCTCATCAGACCATTTGGGAGGCGGCGTCGTACAGGGCAACCGATTGGACCACAACATGCCTTTCAATCAGCCATTCATCCATCATCGGACCCGACACTGATAGCTGGATCAAGTGAAGGAAAGAATATTGTTGCATCAAATGGACATCAAAATGTACCAAAGCAAGGCTCTTCTTCGTCATCGCCAGAGAAGAATTTCTCTTCAACTGAATCTGACCAAACATCGTGGAGACCATATCGAGATCTTGATGATGATGAGCTGACCACGTGGAATAAGATTCGATTGAGAATATTCTATGTTGTTTCAAATGCACTGTTTGAATTCGCCGTTACAGTTTTCATCTTCCTGAATACATTGATCTTGTCATTGGAATATCATGGAATGAACCCCTTCTTCAAGTCAGCATTACTTACTCTCAATCACGTTTTTACGTCGGTGTTTCTAACTGAGATGATTCTGAAACTTATTGCACTGGGAATAAACAGATATATAGCAAGCCGGTGGAACTTATTTGATGGCTTCGTTGTCATTATTAGCATGATTGATCTGATCGTTGACTTTGCAACAAAGAAAGACAATAGTACGCTGAGTATCCTGCGATCTTTTAGACTGCTACGAGTGCTGAAACTGGCCCAATCATGGTCAACAATGAGGAGTTTACTCGGTGCAATAGCCCGTAGTATAAACGCAATGGGACATTTGACACTTATATTAGCCATCATTATCTACATGTTTGCATTGGTTGGAATTCAGCTGTTTGGTAGCAAATACACTCCTGATAAATTTGAATCAGGGGAGACCCCTCGATGGAATTTCAAAGACTTTCCCCACTCCTTCCTGATGTTGTTCCGCATTTTGTGCGGAGAATGGATTGAGCCTCTTTATGAGTGCATGAAAGCAACCTCGACATGGTCAATTGCTTTTTTCATGCCTGCATTGGTCGTTGGAAACTTTCTAGTATTGAACTTGTTTCTTGCATTATTGCTGAGCTCCCTTGCCGATGAAGCTTTTGAACAGGAATTGAAGAGGCGAGACAAACAACGCAGAAACCAACTGAGAAGACTGAAAAATATTCTGACACTTCAAAGTGTGTTGAAGAAAATTGGAGCGAAGAACGCCCCAGACCCACCACAGCCACCGCAAGAAAATGGAACACCGTTGAATAATACAAAGTTTCTTGGCGTCATTGATCAAGTGGCACGGAGGCAATCAATGCGCCATAATGATGATGAACGGAAGAGAATCACGTTGGCACTGGCAGAAGAAAATAGACAAAGGAACTCGACTTCATTACACCCAATAAAAGAAGACCCTTCAAATACCAATGAAGAAAAAGACGAAGAGTCGATAGATCCTAAACCATGTTTCCCGTGCATCCCATGCCTTCCCAATTTGTCAGATCCAAGACCCGGTTGTTGGGGTAAAAGGCAAAAAGAATTTCTCAAAGTGCGAATAGTTTTCAGGAAGATTGTCGAGAATAAATGGTTTGATAATGGAATATTAATACTGATTGTCGCGAGCAGCTCTGTTTTGGTCTTTGAAGATATCCATCTGCCAAGCAAGCCAATGCTGGAGACATTTCTCGAGGGCCTAAATATCTTCTTTTGTGTGGTATTTTTCTTGGAATTTTGTCTGAAGATTATTGGATGGGGTGTTTATTCATACCTCAGAAATCCATGGAATTGTCTCGATTTCTTCATCGTTGTGGTTTCCATCGCAGCCGTTATTAGCAATTATACCAGTAGTAAAGGAAACTTGTCTGCATTTCGATCAATTCGCACTCTTCGAGCTCTGCGACCATTGCGAGCAATATCAAGATGGGAAGGAATCAGGATCGTGGTAAACAGTTTATTCCAAGCAATTCCAAACATCGGAAATGTGTTGTTGGTCTGTGGTATGTTCTGGCTTATATTCAGTATCATGGGTGTGCAATTCTTTGGTGGATTATTCTTCAAATGTTTGGACAAGTCAGGCCAAGCACTTCCCGCATCAGTGGTCCCGGATAGAAACTCGTGCATCGCATTGAAATATAATTGGCAAAACTCAAACGCCAATTTTGATAATGCATTGAATGGGTTCTTGGCTTTGTTGCAAGTGGCAACATTCGAGGGGTGGATGGAAGTGATGAACGATGCCGTGGATGCAGTAGGAATTGACATGCAGCCAAAATTCGAAGCAAATTTCTACGCATATTTCTACTTTGTAGTTTTCATCATAATAGGATCTTTCTTCGTCCTCAATTTATTCATCAGTGTTATCATTGACAATTTCTACCGCATGAAGAAACGGTATGATGATGGCGGAGACTTCAGTATATTCCTTACAAGCAATCAAAGAACGTGGTTTCACACATTAAGAAAAGCTGCAAACAAAAAACCTAAGAAGACGCTGTACAGACCCGAGATACCATGGCAAGCAAAATTATTTGATTTCATTCAAAGTGTGAAATTCGAGACATTCATCATGGTTTTGATTCTTCTCAACATGTTCTTGATGATGATCAGCCATTATAAACAATCAGAAACCATCTCCAACGTTCTCAATATCCTTTTCTACTGAAATTAAATTGAGCTTTTCAGTGAatacaccttttcaactaagcggcctcgttttggaaattttctaaagttctccaaattgcttcatatgaaatttctgacatcagatctaggttcagcacctaaattttagtctggtttctactttccagaattccagtgttgacaattttgattttatgacgataataaagttgaaaatttataagggatttgaccgtaaataatgactgagggtgtaaagttacaccccgagcaattttcacggtgaattcccttatagattttcgaacttcttatcgtcataagatcaaaatcgcgaacagtaggattatgaaaatttgcatctagactaaattttggctgctgatcccaaattcgtggtcaaaaatgtcgtaggaagaaatttttttaaatttc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044564 all species →	Domain	Voltage-gated sodium channel alpha subunit, inactivation gate	Interproscan
IPR043203 all species →	Family	Voltage-gated cation channel calcium and sodium	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10037 all species →	VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001518 all species →	Cellular Component	voltage-gated sodium channel complex	Interproscan
GO:0005248 all species →	Molecular Function	voltage-gated sodium channel activity	Interproscan
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0019228 all species →	Biological Process	neuronal action potential	Interproscan
GO:0035725 all species →	Biological Process	sodium ion transmembrane transport	Interproscan
GO:0086010 all species →	Biological Process	membrane depolarization during action potential	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold1003.g7.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.