Gene detail

Detailed information of scaffold1004.g4.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1004:45836...59810
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1004.g4.t1

caatctagacctaaaattcatagaatgttaaatctttgggctggacatttgacatatcactatgctgaggtaccaaatggtgtatctacgggtgacattgaagaacagttgactacaattttcataccaccatataacacgaatgattttttggtagaagtaagagacttgttaaaaggagcaagcatcctatgagtaggaagttagtaatcccttgtcttagggggaaaatgggtacttgggacacttacacttgtctaatgcagctaaaagacattagtgagctaataaactttgcaacagatttgcacacaagtgaaaagttatctgagatgattcaaaggaacctcgaagatgagcgagcagtcgaaattggagattatttaataagcaatccagaccacttttttaattctctcgttgtcgcaatatatgatggtgatcctcaatggcatgacttcacacgaattgagccaaatagcaaagaagctgagttattggaaatgccagactatgctcgcgaatgccttggttttctttcattgaccaaagaagaaaaaatgtttgcactagacggtcaacaccgtttgtcaggcataaaaaaagctgtagagaacaacgaagatattggctttgagcagctcagtgtcattattgttacacatagaaatacgaagtcaggtattaagaagtctcgtagattattcacaaccctaaataaaaaggccaagctggttaaaaaagatgcaatcatagcattggatgaggatgatatagcggcttgcatcactcgacgaatagtagaagaaagtaaatgcctaaatgaaaacaatgtggcgtttagtgttggaccattaagagataaaactaatgtaacaacgttaggtaatatttttgattgtgtacaaaagctcttatccttcaaattagactgtaagattagtgagattgaaaaagtaaaaatcacagacgaacaagagaatgaattgttcgaatttattaaatcattttatgaaattactttttctaatgttaaaagtttatccgactataaggaaggtcaagacatagaaaaatacagaaacaatcatgatggcggtcatctactgtttagaccaattggttgggatatatacactgatacggtaattgaacttttatcctcggagaaatctttggaaagcgcagttttgattgttagtaaaaatgatttatatatgtcaggtaagattctgaagaataacctttggtcggctcaaagaaaacgaatcctaaaggacacgctcggagttaaactcaacgacagggatcgtaaccaaaaggtcattaatactcaaaggtcaaatatggatatttacccagaaatcgagttatctaaagcacagcataatgcaattgaagctcttagaaaccagtcgtttcctgaacatcaagttactcgctcttactataagcaactcccgcatatgagagttctgaattacgaaggtgatcagttagttggttacatgggattagactacagagttgttcgcgttggtgatgaaatttataaagtattaggtgtgagtgacttttgtgtcgagagcaaagttcaaagacaagctcatattgcgagagcaagcctagatagtgtcggaatagaaagttacatcgctgacgagcacacggtaaatactcagtggctttattcaaatgcaataggcggcgtccgtctgatggtggccgaaagtgatgcagaagatgcgaaacaaatacttagtagcgatttctcagaatcattgggaaatgaagttgacgttgatgaagaaaaagacgtttgccctaaatgtggtagtaaagatctatttgcatttacaaaagaccatgaggtcatgaaatattggaactctggcccctgggtttcaattgaagaagcgcggacatttatagccaagagtacacaggccatgaatagcaatacagaagtgacactaggcatcttcctaaagagcaatggccaacttctgggtaagataatgctgtttaatcacgtgaaagagtctaggcgcgcagaaattggctttggcgttagtcgtcatttctggggtaaaggcattgtattagaggcgggaactgcattaatcgaacacgcattcaaaacactgaatctacgtcgaatcgaggctgagatagatccagacaatacttcttcagagtctggaggccaagagagtgataaaggaacgattaatggtattccggttttgattgctcaaaagttaggtgttcgacttatttacacattggaatcctctccaaattttactcttggtgacattgtaactacgaacattgattggaagcgtagatacgccttaatgaagctacactttgcggctgaagtggtgctcgagatgttttatcagcgtcgggaaggcattgttaagataggcgcgcatatttctgaaaataagagtcgcatagatttcgagtggtctgaaagtattggcccgctattgaaagaaattgaaactgatgtgcaagctttgattaactctgattcagttattattagtgacttttccgatcaagagagtgaaagaaggtattggagagtggatgggtttgcgcaagtaccttgcggtggcactcatttaaagcgcacatcagaagtcggccaaattcaattaaaacgcaagaacatcggtaaaggcaaagaaagggttgagataaccttatgctcgagtttacttatgtcatacattgatgggtttgtcgctgcagtgccgacagcgaataaagaaaagtatatcgcacacgcaaaaatagcagcagaaatgttcagggagtttggggccttaaaggttgttgagacgtgggggagtgaagtaccagatggttgtgcttctgttcctactgttgattcgacagtatcaaatcaaatgaaatcatttgaagcacctcaaaaggggaacgcagggatttacatttaccgagaagatgcttttgtcggagcagcgcttaaaaagtatgtttacgtcgatggggaatgtattggtgaaaccgctcctggtgtattcttctaccatgaggtcgaaggcaataaagaacatcaaatggttaataatgcgttaaacccttatggctactatcattccgagctcaatgttaagagatcggaaaatgatatcatcacgcttgaggttgacgcaggggaggtgatgttggtcaaaaaatctaatattgctgtgtcgggggaggccagtaacgatcaagatttcatcgaactaatcaatcaaactcaacttaaacaagggcagccgttgcttcattctgagtacgatacgctaaagcgaaacttgatttctttggctcagcaaaaaggttacttggatggacgttttatcgaatcgtctttggaagtcattccaagtttgaatcaagctcatgtgaatctgcatttctctagtggttttcgttaccaatttggagagctgtctgtccttacgtcgggtatcgaagcagcacgaatagaagcgatgagaacgtttgagcggggcgacgattttgatactttgaaattgagtcaatatcaggccgacctctccagtactgattggtttcgcagtgtgattgtgaaagcggatttcgaggagatatccgatggtcataaggtgccgatagaagtgctcgcagagccgaattcacgcaatattgtgcaagtcggtggtgggtattcgacagacttaggattacgcgcttcgctgaactggaccaagccttggtacaactcacgtggacacagttttgaggcacaagcgtacgcttccaaaccggaacaatcactattacttggttacaaaattcccacccaaaatgttctaacggattactacgggattcagtttgaatctaagcatgtcgactatcgagacacatcgagtttttctaatgatttatcgtttgagaagcactggcagttagacagtgattggcaaagcaccatgcacgttcgttatttgcaagagagttatcgacaagcgtcggagaataacgaatcacagtttgtgctgtcttgggatattagtgaaaaacacaagtttcactctcgttccaatgttggcattaatgtcgctgacactttgagcgatatcccatcatcattacgcttctttgcgggaggtgatggcaatcttcgtggttatggttatgagtctatctctccgagagatgaaaatggcgatttaaccggtgctcgttacatgtttactgctgggctggaatatcaatatcaggtctaccgccaactgtggcttggggcattctatgatgtcggtgatgccttcaacgatagggtggattggaaaagtggtacagggttgagtttgatatggaattcaaaatacgtgcccgtcaaagtggattttgcttacgggttagatgctcctcaaggagaccaattccgcgttcacttctcactaggcacgcagttttagcgggcattaaaaaggctctcatcct

Transcript

scaffold1004.g4.t1

CAATCTAGACCTAAAATTCATAGAATGTTAAATCTTTGGGCTGGACATTTGACATATCACTATGCTGAGGTACCAAATGGTGTATCTACGGGTGACATTGAAGAACAGTTGACTACAATTTTCATACCACCATATAACACGAATGATTTTTTGGTAGAAGTAAGAGACTTGTTAAAAGGAGCAAGCATCCTATGAGTAGGAAGTTAGTAATCCCTTGTCTTAGGGGGAAAATGGGTACTTGGGACACTTACACTTGTCTAATGCAGCTAAAAGACATTAGTGAGCTAATAAACTTTGCAACAGATTTGCACACAAGTGAAAAGTTATCTGAGATGATTCAAAGGAACCTCGAAGATGAGCGAGCAGTCGAAATTGGAGATTATTTAATAAGCAATCCAGACCACTTTTTTAATTCTCTCGTTGTCGCAATATATGATGGTGATCCTCAATGGCATGACTTCACACGAATTGAGCCAAATAGCAAAGAAGCTGAGTTATTGGAAATGCCAGACTATGCTCGCGAATGCCTTGGTTTTCTTTCATTGACCAAAGAAGAAAAAATGTTTGCACTAGACGGTCAACACCGTTTGTCAGGCATAAAAAAAGCTGTAGAGAACAACGAAGATATTGGCTTTGAGCAGCTCAGTGTCATTATTGTTACACATAGAAATACGAAGTCAGGTATTAAGAAGTCTCGTAGATTATTCACAACCCTAAATAAAAAGGCCAAGCTGGTTAAAAAAGATGCAATCATAGCATTGGATGAGGATGATATAGCGGCTTGCATCACTCGACGAATAGTAGAAGAAAGTAAATGCCTAAATGAAAACAATGTGGCGTTTAGTGTTGGACCATTAAGAGATAAAACTAATGTAACAACGTTAGGTAATATTTTTGATTGTGTACAAAAGCTCTTATCCTTCAAATTAGACTGTAAGATTAGTGAGATTGAAAAAGTAAAAATCACAGACGAACAAGAGAATGAATTGTTCGAATTTATTAAATCATTTTATGAAATTACTTTTTCTAATGTTAAAAGTTTATCCGACTATAAGGAAGGTCAAGACATAGAAAAATACAGAAACAATCATGATGGCGGTCATCTACTGTTTAGACCAATTGGTTGGGATATATACACTGATACGGTAATTGAACTTTTATCCTCGGAGAAATCTTTGGAAAGCGCAGTTTTGATTGTTAGTAAAAATGATTTATATATGTCAGGTAAGATTCTGAAGAATAACCTTTGGTCGGCTCAAAGAAAACGAATCCTAAAGGACACGCTCGGAGTTAAACTCAACGACAGGGATCGTAACCAAAAGGTCATTAATACTCAAAGGTCAAATATGGATATTTACCCAGAAATCGAGTTATCTAAAGCACAGCATAATGCAATTGAAGCTCTTAGAAACCAGTCGTTTCCTGAACATCAAGTTACTCGCTCTTACTATAAGCAACTCCCGCATATGAGAGTTCTGAATTACGAAGGTGATCAGTTAGTTGGTTACATGGGATTAGACTACAGAGTTGTTCGCGTTGGTGATGAAATTTATAAAGTATTAGGTGTGAGTGACTTTTGTGTCGAGAGCAAAGTTCAAAGACAAGCTCATATTGCGAGAGCAAGCCTAGATAGTGTCGGAATAGAAAGTTACATCGCTGACGAGCACACGGTAAATACTCAGTGGCTTTATTCAAATGCAATAGGCGGCGTCCGTCTGATGGTGGCCGAAAGTGATGCAGAAGATGCGAAACAAATACTTAGTAGCGATTTCTCAGAATCATTGGGAAATGAAGTTGACGTTGATGAAGAAAAAGACGTTTGCCCTAAATGTGGTAGTAAAGATCTATTTGCATTTACAAAAGACCATGAGGTCATGAAATATTGGAACTCTGGCCCCTGGGTTTCAATTGAAGAAGCGCGGACATTTATAGCCAAGAGTACACAGGCCATGAATAGCAATACAGAAGTGACACTAGGCATCTTCCTAAAGAGCAATGGCCAACTTCTGGGTAAGATAATGCTGTTTAATCACGTGAAAGAGTCTAGGCGCGCAGAAATTGGCTTTGGCGTTAGTCGTCATTTCTGGGGTAAAGGCATTGTATTAGAGGCGGGAACTGCATTAATCGAACACGCATTCAAAACACTGAATCTACGTCGAATCGAGGCTGAGATAGATCCAGACAATACTTCTTCAGAGTCTGGAGGCCAAGAGAGTGATAAAGGAACGATTAATGGTATTCCGGTTTTGATTGCTCAAAAGTTAGGTGTTCGACTTATTTACACATTGGAATCCTCTCCAAATTTTACTCTTGGTGACATTGTAACTACGAACATTGATTGGAAGCGTAGATACGCCTTAATGAAGCTACACTTTGCGGCTGAAGTGGTGCTCGAGATGTTTTATCAGCGTCGGGAAGGCATTGTTAAGATAGGCGCGCATATTTCTGAAAATAAGAGTCGCATAGATTTCGAGTGGTCTGAAAGTATTGGCCCGCTATTGAAAGAAATTGAAACTGATGTGCAAGCTTTGATTAACTCTGATTCAGTTATTATTAGTGACTTTTCCGATCAAGAGAGTGAAAGAAGGTATTGGAGAGTGGATGGGTTTGCGCAAGTACCTTGCGGTGGCACTCATTTAAAGCGCACATCAGAAGTCGGCCAAATTCAATTAAAACGCAAGAACATCGGTAAAGGCAAAGAAAGGGTTGAGATAACCTTATGCTCGAGTTTACTTATGTCATACATTGATGGGTTTGTCGCTGCAGTGCCGACAGCGAATAAAGAAAAGTATATCGCACACGCAAAAATAGCAGCAGAAATGTTCAGGGAGTTTGGGGCCTTAAAGGTTGTTGAGACGTGGGGGAGTGAAGTACCAGATGGTTGTGCTTCTGTTCCTACTGTTGATTCGACAGTATCAAATCAAATGAAATCATTTGAAGCACCTCAAAAGGGGAACGCAGGGATTTACATTTACCGAGAAGATGCTTTTGTCGGAGCAGCGCTTAAAAAGTATGTTTACGTCGATGGGGAATGTATTGGTGAAACCGCTCCTGGTGTATTCTTCTACCATGAGGTCGAAGGCAATAAAGAACATCAAATGGTTAATAATGCGTTAAACCCTTATGGCTACTATCATTCCGAGCTCAATGTTAAGAGATCGGAAAATGATATCATCACGCTTGAGGTTGACGCAGGGGAGGTGATGTTGGTCAAAAAATCTAATATTGCTGTGTCGGGGGAGGCCAGTAACGATCAAGATTTCATCGAACTAATCAATCAAACTCAACTTAAACAAGGGCAGCCGTTGCTTCATTCTGAGTACGATACGCTAAAGCGAAACTTGATTTCTTTGGCTCAGCAAAAAGGTTACTTGGATGGACGTTTTATCGAATCGTCTTTGGAAGTCATTCCAAGTTTGAATCAAGCTCATGTGAATCTGCATTTCTCTAGTGGTTTTCGTTACCAATTTGGAGAGCTGTCTGTCCTTACGTCGGGTATCGAAGCAGCACGAATAGAAGCGATGAGAACGTTTGAGCGGGGCGACGATTTTGATACTTTGAAATTGAGTCAATATCAGGCCGACCTCTCCAGTACTGATTGGTTTCGCAGTGTGATTGTGAAAGCGGATTTCGAGGAGATATCCGATGGTCATAAGGTGCCGATAGAAGTGCTCGCAGAGCCGAATTCACGCAATATTGTGCAAGTCGGTGGTGGGTATTCGACAGACTTAGGATTACGCGCTTCGCTGAACTGGACCAAGCCTTGGTACAACTCACGTGGACACAGTTTTGAGGCACAAGCGTACGCTTCCAAACCGGAACAATCACTATTACTTGGTTACAAAATTCCCACCCAAAATGTTCTAACGGATTACTACGGGATTCAGTTTGAATCTAAGCATGTCGACTATCGAGACACATCGAGTTTTTCTAATGATTTATCGTTTGAGAAGCACTGGCAGTTAGACAGTGATTGGCAAAGCACCATGCACGTTCGTTATTTGCAAGAGAGTTATCGACAAGCGTCGGAGAATAACGAATCACAGTTTGTGCTGTCTTGGGATATTAGTGAAAAACACAAGTTTCACTCTCGTTCCAATGTTGGCATTAATGTCGCTGACACTTTGAGCGATATCCCATCATCATTACGCTTCTTTGCGGGAGGTGATGGCAATCTTCGTGGTTATGGTTATGAGTCTATCTCTCCGAGAGATGAAAATGGCGATTTAACCGGTGCTCGTTACATGTTTACTGCTGGGCTGGAATATCAATATCAGGTCTACCGCCAACTGTGGCTTGGGGCATTCTATGATGTCGGTGATGCCTTCAACGATAGGGTGGATTGGAAAAGTGGTACAGGGTTGAGTTTGATATGGAATTCAAAATACGTGCCCGTCAAAGTGGATTTTGCTTACGGGTTAGATGCTCCTCAAGGAGACCAATTCCGCGTTCACTTCTCACTAGGCACGCAGTTTTAGCGGGCATTAAAAAGGCTCTCATCCT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14072 all species →	DndB	DNA-sulfur modification-associated	Family	Interproscan
PF07973 all species →	tRNA_SAD	Threonyl and Alanyl tRNA synthetase second additional domain	Domain	Interproscan
PF11008 all species →	DUF2846	Protein of unknown function (DUF2846)	Family	Interproscan
PF13302 all species →	Acetyltransf_3	Acetyltransferase (GNAT) domain	Domain	Interproscan
PF09413 all species →	DUF2007	Putative prokaryotic signal transducing protein	Domain	Interproscan
PF07237 all species →	DUF1428	Protein of unknown function (DUF1428)	Domain	Interproscan
PF01103 all species →	Omp85	Omp85 superfamily domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011322 all species →	Homologous_superfamily	Nitrogen regulatory PII-like, alpha/beta	Interproscan
IPR017642 all species →	Family	DNA sulphur modification protein DndB	Interproscan
IPR012947 all species →	Domain	Threonyl/alanyl tRNA synthetase, SAD	Interproscan
IPR022548 all species →	Domain	Domain of unknown function DUF2846	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR018163 all species →	Homologous_superfamily	Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily	Interproscan
IPR017601 all species →	Domain	DGQHR-containing domain	Interproscan
IPR000182 all species →	Domain	GNAT domain	Interproscan
IPR011008 all species →	Homologous_superfamily	Dimeric alpha-beta barrel	Interproscan
IPR051531 all species →	Family	N-acetyltransferase	Interproscan
IPR018551 all species →	Domain	Domain of unknown function DUF2007	Interproscan
IPR009874 all species →	Family	Protein of unknown function DUF1428	Interproscan
IPR000184 all species →	Domain	Bacterial surface antigen (D15)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43792 all species →	GNAT FAMILY, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G00765)-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0043039 all species →	Biological Process	tRNA aminoacylation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0019867 all species →	Cellular Component	outer membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold1004.g4.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.