Gene detail

Detailed information of scaffold101.g38.t1 in Morbakka virulenta

Genomic Location: scaffold101:1775083...1846491
NR annotation: CAH2250811.1, peptidyl-prolyl cis-trans isomerase-like 4 [Pelobates cultripes]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold101.g38.t1

CTTTACAAATTCTGCAAAAACGTAGCTAAAGTAGACAATATCACCATGAAAGTACTTTAGTGCATATAGCGCACACAATAGCTTTTTTTCACTTCAGTTTTTCTGTGACATTAAGTTCAGGCGGAGTATCACAAGTCCTGTGAAATAAAGAGTGGTTGCTATCAAGAGACTTTATTGTTCATCTGAGCTGAATCCAAACCCTTTATATGAACCTTATATATGGCTACAAAGCAGGGGTTTTTATCTTTGCCCATGCCGCCTTTATTTGTGTCTAACCATATTACTTATATTGAGTTGTTTGTAAGAGCTTTCATACAATGTGATTGAAAAGTTAATGAGAGGGTACACTAAGATTCCATTGTAGTAGCTTGTTACATTTTTCACAGTCGGATTTTACTAGTTTTTAATTCCCATCCGATCACACGCTTTGATCTGTTAAGTGTAGATAGGAAACAAACTAAAAATTCAAAGAAAGGGCAAATTTGCAGGAAACTTCAGGACGTTGACTTTTTAGTTCATTCATATTGTAGTACAAAATGTCTGTCCTCGTGGAAACAACGATTGGGGACATTGTGGTGGATCTCTTTGTAGAAGAGAGACCAAGAGCAACAATGAATTTTCTGAAATTATGCAAGATGAAGTACTATAATTATTGTCTTTTTTTTGCAGTTGAGAGAAATATATGGGCACCAGGCAAGGTATTTTGAAATGGAAATGAAACCAAGAATTAAACATACCCACAAAGGGCTTGTATCATTTGCAAACAATAAGAGTAACATGCATGGATCACAGAATCCACCACACAATAGTTTTGTTTGACCCCTTTGACGATCCAGATGGATTGAAATTTCCAGACAGATCTCCAGAGCCAACGAAAGAGCAACTTAAGAGTGACCGCATTGCTGCTGATGAAGAACTTGATGCAGACGCTGGAAAATCAAAGGAAGAAATACAGGAAATAATAGAAGAAAAGGACTTAAGAATCGGAACCCAAATTCTAGAAACGGTTGGTGACATTCCCGATGCAGATTTGGCTCCACCTGAAAATGTTTTATTTGTCTGCAAGCTAAACCCCGTGACAACCGCTGAAGATTTAGAAATAATCTTTTCCCGCTTCGGCCAGATTTGTAGCTGCGAAATAATTCATGATCAGAAAACAGGAGATTCGCTTCAGTATGGTTTTATAGAATTTGAAAAGGTAGAAGACTGTGAAAAAGCGTATTTCAAAATGGACAATGTACTAATTGATGACAGAAGGATTCATGTGGACTTTTGTCAGTCAGTTGCGAAAGTTAAATGGAAAAAATCCGGATTGTGGCAGAGGCTACAGAACCGGAATGACGCTCACAAAAAGCAAGATATAGTCTTGAAAAAGCCGCAAAGAAATGAAAAATACGAAATGGTCTTTGCCAATTCGCCAGCGGAAAAAAATGCAAGAAAAAAGCCATGGAGGACTGAGAAAAATACAGATGGAAAGGAAAAATGGAAGAAAAGAAGAGAAATGAGCAGCAGTGATTCTTCTGACGACAGCTTGGGATCAGTTTCTGAAAGCTCATCGACTTCAAGTGATGAAGTTCACCGCCGTCGTTTaaagaaagaaagaaaaaaacagaaacgactagatagaagaaaagaTTCAAAAGTGATCAAAAAAGAAAAAGATTTCAACAGAAAGCATTCGAGCAAAACCAAAGCCAGGAGAGAAATAAGCTCAAGTCCAGAAAGGCTTGTGAAAAGGAAAAAAAAGCATGATCGGCATAAAATGGAATAAATTATAGGATGATTAAATTGCAACAGTTGCCTTGATATGAAAATATAGAGGAGAAACGCTTTTGTGTGAAAAAGTGCTTGATAGGTTCTGTTGGCATGTAACAGTTATTCCAGCCTAGTTTAAAAGAGATACATGCGAAGTGTACATAGTGCTTGAGAGCGCTCTTTTAGTTTCAGTTAATAACGCTGTAAATTGAAATACAGATGGGATAAAGTACTCATTTATACTAGGACTGGTTGTATTTTGATTTACCAAAGAAAAAGCATTGTTGGAAAAGATACAGTGGAATCAAGTAAGGGGACACATTTTGGTTTCAAAGAATCATGTATCATGTATGTACCCGAGGTGGTATGTAtccataccacctcgggtgtttgccaacaggtagagatgtgtacccgatttgaaacgggtacacatatggtcggaagtccaacctgcaaagcacgatttacatcgtggaaacgttatgcttctcacttaatggtcaactttggcttcaaggacggtgatacagtttttaatttacgtagtgcaagaactggattctacggtgccccttattttacaagagatctacaatagttattcttactcggtactaaataaaaataatttttttga

Protein

Uniprot

Uniprot term	Description
Q9CXG3	Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus musculus OX=10090 GN=Ppil4 PE=1 SV=2
Q8WUA2	Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens OX=9606 GN=PPIL4 PE=1 SV=1
G5EEW6	Peptidyl-prolyl cis-trans isomerase sig-7 OS=Caenorhabditis elegans OX=6239 GN=sig-7 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR035542	Family	Cyclophilin-RNA interacting protein	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45843	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12735	PPIL4; peptidyl-prolyl cis-trans isomerase-like 4	EC:5.2.1.8	Chaperones and folding catalysts	ko03110	deepkoala