Gene detail

Detailed information of scaffold103.g41.t1 in Morbakka virulenta

Genomic Location: scaffold103:1888109...1915137
NR annotation: XP_040193761.1, LIM/homeobox protein Lhx1 isoform X2 [Rana temporaria]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold103.g41.t1

AGCAACACTATGCTTTAGTCAGACTAAAGGATTAGACAGCAATATTATGCTTCAGTCACACTATAGTATTAGACAGCAATAATGTGCTCCCAACTCTTTGGAGCAAAATGTGTTGGATGCAAAGAGGGCTTACAGCCAACAGACACTGTGTATCGTGTTGGACTTAGTAGCTTTCATTTGAAATGCTTAGCATGTTCAAGATGTCAAAAGCAGTTTACAACGGGAGATCAGCTTTTTGTTGCCGGAGATCAAACATATTTATGTGAAAGGGATTATGAAAGCATAGGAGATTTATCAACTCAAAAGAGCTCAGTCTCTTCTAGCGATTACGAAAATGAAGACAACAATGAACATGACGAAAAAAATACAAATACATCTCTTGCAGATGGTGAAGACGACGATAGCTCCTTAAATGGTAAGAGACGAGGCCCAAGAACTACAATTAAAGCTAAACAGTTGGAAACCCTTCGAACAGCTTTTGCTGCTACACCAAAACCTTCAAGACACATTCGAGAAAAACTGGCTCAAGAAACTGGACTTAGTATGCGGGTCATTCAAGTTTGGTTTCAAAATCGAAGATCTAAAGAAAGAAGAATTAATCAAATGAACCAACTTGGAGGGAGGAGAAATGCTCGCCTGACAGCCACTGTTACACAGAAAACTGCTGAGCTTCACTCAGCAGATCACGAGAGTCTTGAAAATTCTCCCCCAGATCCTGGACCGTTTTCTTTTTACACACAAGGTCCTTCTCCGCTGGACGATTTCTCAAGTCAATGCATAAATTATCATCATTACAACAGACCGGTAATGACGCAAACCAATATTCATATCCAGGCACAGACACCTCTTGCAGGAGCAGGAATGACAAAAAGTGAATATCCAGGACTACAGTTACCTAGAATTAATAATGGTAATATAGATTCAGATCCTAATTCTATATTTCCTATGAGCAATGTTAATTTAGATGTTTTTGGACACGAGCAACCTGGAATTCAGAGCTATCAGCATCAACATCATCATGGATTGGCAGTAACTCAAGATATGCTTTATTAATTTATAACTGTAGGGGAAGAGATAAAAACTATCTTTGATACAGGCTGTAGATGACAGGGGTGTTAACATTAGATATCATTGTGTATGTCACTAATCTAATGACATTTCACCACCAGATGAATAGATAAATGTAATTTTTTTAATTAGTAGAAAAGATAAACTGACAGACGAGAAAGTGAAAATAATTAAAAGCTGTTATTTTAGGGCCTGAATGAATTATTTTAGATTGATCGACCTTGCTTCTGTCAAGAGCTGAAAACAAATGTAAAGGACCTCTGAAATGGGTTTTGAATAAAAATGAGCAACTACACCCTACCACTATTGGAAAATAAAGGAAACGCCTTTTCAAAAATTGATTTAGAAAAAATTTTGCATTAAGAATATCCAAAGTAAGGGGAATTAACAGAAGAGCCTAACTAATCCAACAATAGACAGTAACCAACTAACAAAATACAGTATAGATTTCAAATCGTTTAGTAGTATGTCTGGATCCCACTCGTTCCTGTGTTTACTAGATTAGCATTAGAAGAAACACCTCTTACACATCTTTTTGATAAAAATGAAACACTAATTGTTGTTACAATCCATACAAGCACGCCTTCGTTACAACCCATACAGACATGCCTTAGTTACCATCCGTACATACAGGCATGTCTTAGTTACAATTCATACAGGTTTGCCTTAGTTACAATCCATACAGGCATGCCTTAGTTACAGTCCGTACAGACATACCTTGGTTACAATCCATACAGGCACGCCTTAGTCTCACTAAGGCTTACCCTAAAAAAACAGCATGGTACAGTAGACTTAAAACAAGCAGGTCATAATCAAGATCTACTAGCAATTGAGATTGCAATCGAGGAATTTTGAAAATGCCTTTTGCTTTTAACAAAACTGTCTGGTATTTTGGCCTTAACTTAAAAATAGCGCAAAATGTTTGAGTACCAACATTGGGGTTTTTTATTGAATAATGTATTGTTATTGGT

Protein

Uniprot

Uniprot term	Description
P53411	LIM/homeobox protein Lhx1 OS=Gallus gallus OX=9031 GN=LHX1 PE=2 SV=1
P48742	LIM/homeobox protein Lhx1 OS=Homo sapiens OX=9606 GN=LHX1 PE=1 SV=2
P29674	LIM/homeobox protein Lhx1 OS=Xenopus laevis OX=8355 GN=lhx1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF00412	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR050453	Family	LIM/homeobox transcription factors	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001781	Domain	Zinc finger, LIM-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24208	LIM/HOMEOBOX PROTEIN LHX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030182	Biological Process	neuron differentiation	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09372	LHX1; LIM homeobox protein 1	-	Transcription factors	ko03000	deepkoala