Gene detail

Detailed information of scaffold1050.g4.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1050:24789...33104
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1050.g4.t2

atttgcaaagctcagcacaatgcatttggtttcgttgtcgattcttctactcggcctggctggctatactgcagcctactatagagtttgttacttcacaaactgggcgcagtacagaccaggagatggcaaatacaagccgcatcatgtcgacccatttctctgcacccatctgatgtactcatttgcgaaacttcacaatggtaaaatcgcaatgtatgaatggaatgatgacaagctgtatgctcaggttgaagccttgaaacaaaaaaatcccgccctgaaaacgcttctcgccattggcggttggaaccacgaaaatggtcaaaccagcaaattctctcaaatggtagccacagctcaaaagagaaagatcttcatcgactctaccatcgctcatttgaggcagtggggctttgatggtctggatcttgattgggaatacccaggaggaagaggcaactctccaccantttaataacggctacttcttggtcgaagccttgaaacaaaaaaatcccgccctgaagacgcttcttgccattggcggttggaaccacgaaaatggtcaaaccagcaaattctctcaaatggtagccacagctcaaaagagaaagatcttcatcgactctaccatcgctcatttgaggcagtggggctttgatggtctggatcttgattgggaatacccaggaggaagaggcaattctccacctgaagacaaacacagattcaccctcctctgcagggaattgagagcagcatatgagaaggaagccagcgaatctggcaaggacagactccttttgacagccgcagtgtctgctgggaaaccaacgattgataatggatatgaggttgatcaaatctctaagtccttggattggataaacattatggcctatgatcttcatggtgtgtgggacaagaagacgggacatcacactgcgatgaagccagaatccccagatgatttcttgaccgtcccatttgctgttgactactggatgaaacttggtgcacctgccaaaaaattggctcttggtcttggcacatacggtcgaacattcaccatcgctgacaggacaaatacagacctcggatctctctcacgacagagtggtcgcagaggacaatacacacgggaaggtggttttttggcctattatgagatttgcagaatgggacttaccatggtaacagacaatgcagctggtgcaccatacggatacaaaggtgaccaatgggttggatttgacaccagggaaagtttaatggacaaggttgctttgatcaagagcaagggacttcttggtgcaatgttttgggcttatgatctggacgacttcgatggtaaattctgtgggcaaggaccatacccacttatgaatgcagtcaagaatgctttagggagtgatgtaacaccaactttccccccacagccaacacagccacccaagccaccaactcaaccaccagttgtgacagatggcccaccacagccaccaacccaaatgccaccagtgcctcccacaaacccaccaagtggaacatgcaaagcgaagggatcatgggctgggaatgcaggcatggatgcatggtgtgcgtctaactgtgctgctggaaactgccctgcatctcattctcattttgtgacatggagacttaagttacaaggtaccaatacagttttgatccgtcgtaaggttgctacagtacaagagcgtttaagctgctccagtgcaaaattactctgcggacagaagaagcaaaagtgttacagtttagcaggaacagtgttagtgggaggttgattcttgctagactgacaacgtgattccttgtattcgttcgattcttttacattgactccttaattccataaccaccatctaattcaattcagtgttggaaaccaacacttgtgtatcagtctagggtagatctgtaccactttttttgtggataaatgttgtccacgtgcaatgtaaatggggtcaaaaacaggggtggctccagaggagggctagggggctacagccccctcgtcggaagcatctagccccccccccgttggaggacatttcgggttgctgtcggaggaaatttggcaaaatgacgtatgaaaactgcattttctagccattttagcccccctgtcggaagctccagcccctctgtcagaagattcctggcaccacccctggtcaaaaactagcgtagattgattcagtttcacttataggctcattcgttatttgaattagggtcttgaatgatagttagagaaacccctactagttgtttcaaaaatgcgttttttgcaactcattttgcgacattagatttgcatgaataaacctatgaaagttcaaaattcatacatctacacttatcatacttttaaattgtttcaccggcagagaaaaaaaccttagaacttttccatgtattgttgcagtactttcaattctcatttcttttcaattttaattgtttctgttgacttttttccctcgttcgatatcctggagcaaatcagttcttggggcattctgctttcaagttcaatttttgactcggtttggatgttcggtaaattacagattctcgtttcagtgtttctttctcgtttgttcaaaatgctgtctagaattccaagtctagtctcccctactgaaactttatcaatgtttgcattattgtcataaattgccaacgctgtgaaatatccacctcctcgataaatcttgcgcggactaatcttcttcaaactttgcctgttgtctattttatcaagatccagttcttctatattgaaggttttgctgtttcgctttattgccttgtttcgttcatttcgttcgctattaacttgtgaggactcagacgtcatcaaaattctcataaaatctactgaacttgggaaccgtctttcgtgtgattcatcttgcttcatggagttagatatttgttttaaattctcttctttgtgactcattgcgacttgctgcatgtgataataactatgttgcgttcga

Transcript

scaffold1050.g4.t2

ATTTGCAAAGCTCAGCACAATGCATTTGGTTTCGTTGTCGATTCTTCTACTCGGCCTGGCTGGCTATACTGCAGCCTACTATAGAGTTTGTTACTTCACAAACTGGGCGCAGTACAGACCAGGAGATGGCAAATACAAGCCGCATCATGTCGACCCATTTCTCTGCACCCATCTGATGTACTCATTTGCGAAACTTCACAATGGTAAAATCGCAATGTATGAATGGAATGATGACAAGCTGTATGCTCAGGTTGAAGCCTTGAAACAAAAAAATCCCGCCCTGAAAACGCTTCTCGCCATTGGCGGTTGGAACCACGAAAATGGTCAAACCAGCAAATTCTCTCAAATGGTAGCCACAGCTCAAAAGAGAAAGATCTTCATCGACTCTACCATCGCTCATTTGAGGCAGTGGGGCTTTGATGGTCTGGATCTTGATTGGGAATACCCAGGAGGAAGAGGCAACTCTCCACCANTTTAATAACGGCTACTTCTTGGTCGAAGCCTTGAAACAAAAAAATCCCGCCCTGAAGACGCTTCTTGCCATTGGCGGTTGGAACCACGAAAATGGTCAAACCAGCAAATTCTCTCAAATGGTAGCCACAGCTCAAAAGAGAAAGATCTTCATCGACTCTACCATCGCTCATTTGAGGCAGTGGGGCTTTGATGGTCTGGATCTTGATTGGGAATACCCAGGAGGAAGAGGCAATTCTCCACCTGAAGACAAACACAGATTCACCCTCCTCTGCAGGGAATTGAGAGCAGCATATGAGAAGGAAGCCAGCGAATCTGGCAAGGACAGACTCCTTTTGACAGCCGCAGTGTCTGCTGGGAAACCAACGATTGATAATGGATATGAGGTTGATCAAATCTCTAAGTCCTTGGATTGGATAAACATTATGGCCTATGATCTTCATGGTGTGTGGGACAAGAAGACGGGACATCACACTGCGATGAAGCCAGAATCCCCAGATGATTTCTTGACCGTCCCATTTGCTGTTGACTACTGGATGAAACTTGGTGCACCTGCCAAAAAATTGGCTCTTGGTCTTGGCACATACGGTCGAACATTCACCATCGCTGACAGGACAAATACAGACCTCGGATCTCTCTCACGACAGAGTGGTCGCAGAGGACAATACACACGGGAAGGTGGTTTTTTGGCCTATTATGAGATTTGCAGAATGGGACTTACCATGGTAACAGACAATGCAGCTGGTGCACCATACGGATACAAAGGTGACCAATGGGTTGGATTTGACACCAGGGAAAGTTTAATGGACAAGGTTGCTTTGATCAAGAGCAAGGGACTTCTTGGTGCAATGTTTTGGGCTTATGATCTGGACGACTTCGATGGTAAATTCTGTGGGCAAGGACCATACCCACTTATGAATGCAGTCAAGAATGCTTTAGGGAGTGATGTAACACCAACTTTCCCCCCACAGCCAACACAGCCACCCAAGCCACCAACTCAACCACCAGTTGTGACAGATGGCCCACCACAGCCACCAACCCAAATGCCACCAGTGCCTCCCACAAACCCACCAAGTGGAACATGCAAAGCGAAGGGATCATGGGCTGGGAATGCAGGCATGGATGCATGGTGTGCGTCTAACTGTGCTGCTGGAAACTGCCCTGCATCTCATTCTCATTTTGTGACATGGAGACTTAAGTTACAAGGTACCAATACAGTTTTGATCCGTCGTAAGGTTGCTACAGTACAAGAGCGTTTAAGCTGCTCCAGTGCAAAATTACTCTGCGGACAGAAGAAGCAAAAGTGTTACAGTTTAGCAGGAACAGTGTTAGTGGGAGGTTGATTCTTGCTAGACTGACAACGTGATTCCTTGTATTCGTTCGATTCTTTTACATTGACTCCTTAATTCCATAACCACCATCTAATTCAATTCAGTGTTGGAAACCAACACTTGTGTATCAGTCTAGGGTAGATCTGTACCACTTTTTTTGTGGATAAATGTTGTCCACGTGCAATGTAAATGGGGTCAAAAAcaggggtggctccagaggagggctagggggctacagccccctcgtcggaagcatctagccccccccccgttggaggacatttcgggttgctgtcggaggaaatttggcaaaatgacgtatgaaaactgcattttctagccattttagcccccctgtcggaagctccagcccctctgtcagaagattcctggcaccacccctgGTCAAAAACTAGCGTAGATTGATTCAGTTTCACTTATAGGCTCATTCGTTATTTGAATTAGGGTCTTGAATGATAGTTAGAGAAACCCCTACTAGTTGTTTCAAAAATGCGTTTTTTGCAACTCATTTTGCGACATTAGATTTGCATGAATAAACCTATGAAAGTTCAAAATTCATACATCTACACTTATCATACTTTTAAATTGTTTCACCGGCAGAGAAAAAAACCTTAGAACTTTTCCATGTATTGTTGCAGTACTTTCAATTCTCATTTCTTTTCAATTTTAATTGTTTCTGTTGACTTTTTTCCCTCGTTCGATATCCTGGAGCAAATCAGTTCTTGGGGCATTCTGCTTTCAAGTTCAATTTTTGACTCGGTTTGGATGTTCGGTAAATTACAGATTCTCGTTTCAGTGTTTCTTTCTCGTTTGTTCAAAATGCTGTCTAGAATTCCAAGTCTAGTCTCCCCTACTGAAACTTTATCAATGTTTGCATTATTGTCATAAATTGCCAACGCTGTGAAATATCCACCTCCTCGATAAATCTTGCGCGGACTAATCTTCTTCAAACTTTGCCTGTTGTCTATTTTATCAAGATCCAGTTCTTCTATATTGAAGGTTTTGCTGTTTCGCTTTATTGCCTTGTTTCGTTCATTTCGTTCGCTATTAACTTGTGAGGACTCAGACGTCATCAAAATTCTCATAAAATCTACTGAACTTGGGAACCGTCTTTCGTGTGATTCATCTTGCTTCATGGAGTTAGATATTTGTTTTAAATTCTCTTCTTTGTGACTCATTGCGACTTGCTGCATGTGATAATAACTATGTTGCGTTCGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00704 all species →	Glyco_hydro_18	Glycosyl hydrolases family 18	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001223 all species →	Domain	Glycoside hydrolase family 18, catalytic domain	Interproscan
IPR011583 all species →	Domain	Chitinase II	Interproscan
IPR029070 all species →	Homologous_superfamily	Chitinase insertion domain superfamily	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR050314 all species →	Family	Glycosyl Hydrolase Family 18	Interproscan
IPR001579 all species →	Active_site	Glycosyl hydrolases family 18 (GH18) active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11177 all species →	CHITINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0008061 all species →	Molecular Function	chitin binding	Interproscan
GO:0004568 all species →	Molecular Function	chitinase activity	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0006032 all species →	Biological Process	chitin catabolic process	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01183	E3.2.1.14; chitinase	EC:3.2.1.14	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.