Gene detail

Detailed information of scaffold1071.g1.t5 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1071:27916...55314
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1071.g1.t5

aagaattgtcatatcattatgaagaaatggtcgaacgaaagaaaaacttaagcaattgtaacaataagaatgttatgaacatcgcaaaacaggcaactactggaaatgagacacaaatatgcgagctgaggctgagcaatattcttataatattcttaaaatttggatgattctgagcctgaatattcttataaacaatattcttataaaaaaaaagagtgtatgaacctatgaacaaatgaggtgtcttccaagaccacatcagattccttctttgtctaacaacaccattgaatattgttgttcttggagtagggtttgcagatcagaaagatggtaaagtttacgaagaaatgcatttacaaccacagcctttgtttactgtctcaactgacaatattttcatgacatcaattggtggtctatggaatggacgcatatttttaagtggagctgatggcagtttgtatgagcttgcatatcatgctcaaagtagttggttcagacaaaggtgcaagaaaattaatcattcagctggctggtcttctattctcgttccatcctttctcagtaaagcttttacgagtgaagatgcaataactcaaattgctattgacaatacgagaaacactttgtatggcaggactgaaaatggaagtattcaggtttatgatgccggggaagatggttcaggaatgcgtttggtcacttatatgaatgccaactccattgctgtaaatgcatcacatgttgctaagaacatcgatcgaaaacatattcagaagatagttcacatagctccgatttcaagagctgaatctataaatgtacatctcgttgccatcacagatacaggactacgtttatatttctgtactacatcacctacgaacccagaagctaggccatgcatgcttcgtctggcacatgttcgtatgccacctggtttcacgccttcgggtacgacagggaaaccaaccaaagttcatcaggcattttacagacaaggaacaacgatgatgattgaaagttcatctgaagaagtagactctttatggtgtttaagccaagaatcgtttccatttcaaagcaacgtaaaggagagtcaggtgtcttccatgatcgaaggtaaaacgtggtgtgctactgaaatccccgattacagcaatgcgaatcatattcctccaattcactttgcttgtcaatggccagaaccgccagcaatcgttagtcagcatgtgttgccacagagaagatttgtactgctcagcccaaagggaagccacatcatcacaaccctacgacctgttgaacaactcagagaactattcatcgcgtgtggaagtggtgaatcagaggctattgaaagtttcttcaagttctatggggtaactcaagcatgtgcaatgtgcctcatattaatttgtcaaggtccagctatagaaaacgaggttgttggttgggcagttcatgcattcttcagatacgactccagtccgacttcaacccgggctgtacaaactgcagatgtgacgacaaatatagctgatacgagttatatcatgggtggaccagcattaggtggtagtactcatggaagttatcttgcttcgccaattcagagaaggcagcaaccacaatcaatagggcctcaattcagtacttcaacgcctgcagttggtttgactcattctacttcgaatgcatgttctggaaaacatagtggaatcgctctgtaccttgcaaggatactcgggccaatatggaatcatcatcttgttatcaaagactatccggatggcaggactcaacagcttgtaagtcggctgtctagtgaagatctatcgtggtttattgaaagtcttcgaaaattgaaggaattcatggaacgatattcgaacatggagcaattcagactatacaacactacagggacgtgaccacaaggagcaaaagataatgactaccaggtggacattaacataaagacatgcaaaaaatagtaactaaataaacaactgcaaaaagctacaaatacgataaattactgataaatactagaatccgtttcacattggatgtcaggccagcatagtagtatgatgctgagcaataggaaccccggacgagagaacaacaacgacagcagttgctacagctactgatccccctccagagtccccaacgctcaacacattgcacatatgctgtcagctctgggtttctgattcgcaatatcaatggtccgaaatactgtcacttttgtgtggatgaattttcattcacccttgatgtgcctaacataaaatgtgaaacagacttacaaaatatacggggaaaagtgtacatagtggttgtgtggcggtggcgtaaaacgattgtttgaagttatccaagccgacctgttttgtggatgaaacttagagtctgttcgagtatatttttattcacttcgtcagaaagttctttattaccatacaataagtattgaaccagaacattgtttggaagggcgtcgatttggacaaatggtcgcaacaattctgaaactccagcgagaagatcttgccgttgaatgtcgaatgaagggcaaagcaacaaaaagtgctccgtatcctcaatgccatcattcgttgggcacattggattcactgtatccctaaaattgtgtttgaatttgtgaaaattcaatttgctgagaccgaccctgatttgtaaaagataacctaagcctattgggtcatgaataccgaaaacagactttgcacggggacgaatcattgacagaagctttgttttaaagacagcgacagaaggtgcaagtctgattgctggatcaagtttattccattcagagatgcaattgggatagaaacttgatagaaacttctctgttcttgcccttattcgcccaataacatcctggttgcgaagagagtagtttggctgttgaagaagtgggattggctcctttgtatacaatggagtgaggttatttatgatcttatagaataaagtaaggcgtctactccatctacgggaacttagtgactcccagccaagctctgcatacagtttttctcgtgatgatcctctccatgttcctgttacagcaagtgcagcagaatattggacagattctaatttttccattaaatttggtaaaatgatgttttgactgaattcacatactttagctggaatatgataaataacatccccgtagtcca

Transcript

scaffold1071.g1.t5

aagaattgtcatatcattatgaagaaatggtcgaacgaaagaaaaacttaagcaattgtaacaataagaatgttatgaacatcgcaaaacaggcaactactggaaatgagacacaaatatgcgagctgaggctgagcaatattcttataatattcttaaaatttggatgattctgagcctgaatattcttataaacaatattcttataaaaaaaaagagtgtatgaACCTATGAACAAATGAGGTGTCTTCCAAGACCACATCAGATTCCTTCTTTGTCTAACAACACCATTGAATATTGTTGTTCTTGGAGTAGGGTTTGCAGATCAGAAAGATGGTAAAGTTTACGAAGAAATGCATTTACAACCACAGCCTTTGTTTACTGTCTCAACTGACAATATTTTCATGACATCAATTGGTGGTCTATGGAATGGACGCATATTTTTAAGTGGAGCTGATGGCAGTTTGTATGAGCTTGCATATCATGCTCAAAGTAGTTGGTTCAGACAAAGGTGCAAGAAAATTAATCATTCAGCTGGCTGGTCTTCTATTCTCGTTCCATCCTTTCTCAGTAAAGCTTTTACGAGTGAAGATGCAATAACTCAAATTGCTATTGACAATACGAGAAACACTTTGTATGGCAGGACTGAAAATGGAAGTATTCAGGTTTATGATGCCGGGGAAGATGGTTCAGGAATGCGTTTGGTCACTTATATGAATGCCAACTCCATTGCTGTAAATGCATCACATGTTGCTAAGAACATCGATCGAAAACATATTCAGAAGATAGTTCACATAGCTCCGATTTCAAGAGCTGAATCTATAAATGTACATCTCGTTGCCATCACAGATACAGGACTACGTTTATATTTCTGTACTACATCACCTACGAACCCAGAAGCTAGGCCATGCATGCTTCGTCTGGCACATGTTCGTATGCCACCTGGTTTCACGCCTTCGGGTACGACAGGGAAACCAACCAAAGTTCATCAGGCATTTTACAGACAAGGAACAACGATGATGATTGAAAGTTCATCTGAAGAAGTAGACTCTTTATGGTGTTTAAGCCAAGAATCGTTTCCATTTCAAAGCAACGTAAAGGAGAGTCAGGTGTCTTCCATGATCGAAGGTAAAACGTGGTGTGCTACTGAAATCCCCGATTACAGCAATGCGAATCATATTCCTCCAATTCACTTTGCTTGTCAATGGCCAGAACCGCCAGCAATCGTTAGTCAGCATGTGTTGCCACAGAGAAGATTTGTACTGCTCAGCCCAAAGGGAAGCCACATCATCACAACCCTACGACCTGTTGAACAACTCAGAGAACTATTCATCGCGTGTGGAAGTGGTGAATCAGAGGCTATTGAAAGTTTCTTCAAGTTCTATGGGGTAACTCAAGCATGTGCAATGTGCCTCATATTAATTTGTCAAGGTCCAGCTATAGAAAACGAGGTTGTTGGTTGGGCAGTTCATGCATTCTTCAGATACGACTCCAGTCCGACTTCAACCCGGGCTGTACAAACTGCAGATGTGACGACAAATATAGCTGATACGAGTTATATCATGGGTGGACCAGCATTAGGTGGTAGTACTCATGGAAGTTATCTTGCTTCGCCAATTCAGAGAAGGCAGCAACCACAATCAATAGGGCCTCAATTCAGTACTTCAACGCCTGCAGTTGGTTTGACTCATTCTACTTCGAATGCATGTTCTGGAAAACATAGTGGAATCGCTCTGTACCTTGCAAGGATACTCGGGCCAATATGGAATCATCATCTTGTTATCAAAGACTATCCGGATGGCAGGACTCAACAGCTTGTAAGTCGGCTGTCTAGTGAAGATCTATCGTGGTTTATTGAAAGTCTTCGAAAATTGAAGGAATTCATGGAACGATATTCGAACATGGAGCAATTCAGactatacaacactacagggacgtgaccacaaggagcaaaagataatgactaccaggtggacattaacataaagacatgcaaaaaatagtaactaaataaacaactgcaaaaagctacaaatacgataaattactgataaatactagaatccgtttcacattggatgtcaggccagcatagtagtatgatgctgagcaataggaaccccggacgagagaacaacaacgacagcagttgctacagctactgatccccctccagagtccccaacgctcaacacattgcacatatgctgtcagctctgggtttctgattcgcaatatcaatggtccgaaatactgtcacttttgtgtggatgaattttcattcacccttgatgtgcctaacataaaatgtgaaacagacttacaaaatatacggggaaaagtgtacatagtggttgtgtggcggtggcgtaaaacgattgtttgaagttatccaagccgacctgttttgtggatgaaacttagagtctgttcgagtatatttttattcacttcgtcagaaagttctttattaccatacaataagtattgaaccagaacattgtttggaagggcgtcgatttggacaaatggtcgcaacaattctgaaactccagcgagaagatcttgccgttgaatgtcgaatgaagggcaaagcaacaaaaagtgctccgtatcctcaatgccatcattcgttgggcacattggattcactgtatccctaaaattgtgtttgaatttgtgaaaattcaatttgctgagaccgaccctgatttgtaaaagataacctaagcctattgggtcatgaataccgaaaacagactttgcacggggacgaatcattgacagaagctttgttttaaagacagcgacagaaggtgcaagtctgattgctggatcaagtttattccattcagagatgcaattgggatagaaacttgatagaaacttctctgttcttgcccttattcgcccaataacatcctggttgcgaagagagtagtttggctgttgaagaagtgggattggctcctttgtatacaatggagtgaggttatttatgatcttatagaataaagtaaggcgtctactccatctacgggaacttagtgactcccagccaagctctgcatacagtttttctcgtgatgatcctctccatgttcctgttacagcaagtgcagcagaatattggacagattctaatttttccattaaatttggtaaaatgatgttttgactgaattcacatactttagctggaatatgataaataacatccccgtagtcca

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08801 all species →	Nucleoporin_N	Nup133 N terminal like	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014908 all species →	Domain	Nucleoporin, Nup133/Nup155-like, N-terminal	Interproscan
IPR004870 all species →	Family	Nucleoporin, Nup155-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10350 all species →	NUCLEAR PORE COMPLEX PROTEIN NUP155	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000972 all species →	Biological Process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006405 all species →	Biological Process	RNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0036228 all species →	Biological Process	protein localization to nuclear inner membrane	Interproscan
GO:0044611 all species →	Cellular Component	nuclear pore inner ring	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold1071.g1.t5.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.