Gene detail

Detailed information of scaffold108.g57.t1 in Morbakka virulenta

Genomic Location: scaffold108:2185380...2194686
NR annotation: XP_050399601.1, ATPase WRNIP1 [Patella vulgata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold108.g57.t1

TGGAAGTGCCAGTGGCACAAGCACAAGGCAAAAATGGACAAGGATGCAAGGGTGGAATGTCCAATTTGTGCTGAAGAAATACCGTTATCAGACATTAATTTACATGTGGATCAGTGTCTATGTAGGAGCAGTATAAATGTTAAATCAACAGAAAAGCAATCGAAAAGTATACCCAGTCAAGAACAGCAGGAAACCGATAACAATTGGCATGGTAAACTACTATCGAATGAGACAATTTCACCCAAGCCCTTTTATGAAGTTCTTGGGAAGAGGAAAAGAACAGAGCAGGAGATAAAGTCACCTAAAGAATCACCTAAAATGAAAAAGCTTGGGTTGAACAGAGACATATTTGAGATTGCGAATGACAAAACACATGCAACCGCAGGAGATAGTGTGGAAACCGAAATAATGAGTAATCAAAACAGTTCTTATTTGGGGACAGTAACATCTGATTCATCATTCATAAAGCGCCCAGAGAATAGTGCTACATCAACTGAATCATCCTTGAAGCAGCTTTGGAGTAGGACGCCCCTTGCTGAACAGATGAGGCCGGACGCACTCGAAGAATACATTGGTCAAAGTGTTGTTACCAACAGTAACACACCTTTCATTAAATTGATTCGGGCAACTGAAATCCCCTCCCTTATTTTATGGGGGCCACCAGGCTGTGGCAAGACAACTCTTGCTCATATTATTGGATGTTATTGTAAAAAGTCAGGAAAAGCAAGATTCATTAAGCTTTCTGCAACTAGTGGTTCTGTAAATGAAGCCAGAGAAGTGATCAGGACTGCAAAGAATGAGAAAGGAGTACTTGGTAGAAGAACTGTTATGTTTATTGATGAGATCCACAGATTTAACAAGTTGCAGCAGGATGTGCTTCTGCCTCATGTTGAGAATGGGACAATAATTCTCATTGGTGCAACAACCGAAAATCCATCATTTTATGTAAATAATCCATTGTTGAGCAGATGTAAGGTTATAGTTTTAGAAAAACTGAAAACAGAAAGTATCAGAGACATTTTGATACGTTCAGTTAACAAACTTGATGCAGTTCTTGTTAACAGAGATGGGTGCATATTAAATAATAATAGCTCAGAAAGTGACACAAGTTCTTTAAAAGTGGAATTTGAAGCAGTTAACTACTTAGCACAGATGTGTGATGGTGATGCAAGAATTGCATTAAATGGACTAGATATTGCTTTACGGTCAATTGCAGCAGAAAAAACCGACCCAGTTGGTCATGATTCTTCTCATTATAAAACCAGAACTATTACTCTTGATATGACAAGGGAAGCTATGCAACGCAGTCATGTACCATATGATAAGCATGGTGATGAACATTACAATATGGCATCAGCACTTCAAAAATCTATCCGCGGCGGCGACGATAATGCTTCTCTGTATTGGCTGGCTCGAATGCTAGAAGGAGGCGAGAATCCGCTCTTTGTAGCCAGGCGGCTTATACGGATAGCAAGTGAAGATGTCGGTATTGCGGACGTAAAAGCTCTCCAGGTAGCAGTTGCAGCTTATCAAGCTTCACATTTAATTGGAATGCCTGAATGTGATGCCGTTCTTGCAGAAGCAGTGGTGTACCTTGCACGTGCACCAAAATCTTTCGAAATATATTTTGCTTATGAAAAAGCTAAAGCCTTGATCAAACAAGGAGAAGGGCCCGTTCCGGGGGTACCATTACATCTTAGAAATGCTCCCACAAAATTAATGAAAAATTTGGGATATTCAGTAGGGTATAAGCATGATCCTTCAATGGAGCAAACGTACCTTCCAAAGGAGTTGCAAGGAATTAATTTTTTCGATGAGTAATGTAACAAACTTTTCAAAGCTTCGCGAAGGATTCTTCAAGCCCAGACAGATCTCAGTTGCATTGCAGCGGATATCTTGGTTTCTAAAAGACGCAGGAAGCTGTCACCTTTATAAACTCCTGCATGTTTAAAAGATCTGGAATAAAATTTTCAGAGAGAAATCGGTCATTTGCTAATCATTTGCCTCTGTCTATGTACAGTAAAGATGACAGAGTGAAGCTGAAGATATATTTGGCGGAGTGAAGCTGAAGATATATTTGGCGGAATGAAGCTGAAGAAGTAAAGCTATTTTAGAATCCAGTTTTGCAAACAACCAATGTACATAAAATGAGAAAGCACTGGCACTGTTTTGACACCGACTCGTGCAGTGTTCACAATTATTTCGAACATGCTATTTTGTTGACACATATTTTGCATCCATTTTAGGTAACCAGCCAGATTACTCGTTTTGCTTCGTGCTATAGTTTTATATTATTGAAATACTCATTTTAGTGTCGTTTTTCGGGGAAGGTGAAGAAGGGACATTAAATAGTGTTTTGATTAAGGTAGTTTATTCCCCATCATCACGAATACAAGAGAAAAATCGAGTTTATGAGAGCTAGATGTAATACCAGTGAGACGTATTAAACGAAATTAAGGAGAGAACTTTAGATTTCTACAAAAATACTTTACATAGTTATTGTGCTCTTTTGTGCTTTTAACGTTTGACATGCTAATAGTCCATATTAGGAATTTAAGGAGagtaattcctcactgccaaacccaagtccctatgaaggcactgtctgagccctacgtactggggaaaatgacgttaaaacaaaacaaaaaaATTCCGGCTGTAGACAAGTGAATTTGGTGGCACATTGGTTCTTTCAGTGCTTTAACATTAGATTTTCGATCGCCAGTTTATTTCTTGTTTCATTTTCGTTTGTGAGTATGTTGCTGAGCATTTGTTACGAGGTGTAAATGTTTTTGTAATAAAAGAGTATTGGGCCTTTTTTCCCATGTGCTATAGATGAGCATAGATCCCATGAAAAAATATAAAGATTGATAGATGTATAGAGTTATAAATTGAATAAATTGGTTAATACTATAGTGATGATATTTTAGGCTATTGCGAGGATGGATAAATAATCCACATGACACAACTGAGTGCATATTTTAAAAGTAAATGGAACCTTCTCCAAGTTTGAAAAAAATGTCAAACGGCAAGCCATTGAAAAAGCTTCCTTCCGGTGAAAACCTGTTTACTTTTTATAATTTGTCTCTTTTATAGATGGCGTTATATTTATTTTAAGAATTCTGCTTTCGCACTCTGTAAAATTGCAATGGTTATTTGAGTTTATTTTTCCATTCGAGCCCCAGTCTTCCTAGAGAATAGGTTGTTTAAATATTTGACACTGAAATCGATAAACAGTCCATTATGAAATGTTTCACGCTATGTAATACCGCATAGCTGTATTGGGAAAAAGGCGTTTTTGTACGACCTTTCACTTAAATAGCAACTCTTTCACATACCTGTTTAACCTTAGTTATATAACTGTTTCGTAATCTCGCCCTCGTAGACGTTTATCTTGTTTGTGCGTATAATCATTGGAAATATTTTTTAAAAGTTTTAAAACAACAATGATCCGACACAAAAAAGAGAACAGAATGTA

Protein

Uniprot

Gene family

Uniprot term	Description
Q91XU0	ATPase WRNIP1 OS=Mus musculus OX=10090 GN=Wrnip1 PE=1 SV=2
Q8CG07	ATPase WRNIP1 OS=Rattus norvegicus OX=10116 GN=Wrnip1 PE=1 SV=1
Q96S55	ATPase WRNIP1 OS=Homo sapiens OX=9606 GN=WRNIP1 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	UBD\|ZnF\|UBZ

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05496	RuvB_N	Holliday junction DNA helicase RuvB P-loop domain	Domain	Interproscan
PF16193	AAA_assoc_2	AAA C-terminal domain	Family	Interproscan
PF12002	MgsA_C	MgsA AAA+ ATPase C terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006642	Domain	Rad18, zinc finger UBZ4-type	Interproscan
IPR008824	Domain	RuvB-like P-loop domain	Interproscan
IPR032423	Domain	AAA C-terminal domain	Interproscan
IPR021886	Domain	MgsA AAA+ ATPase C-terminal	Interproscan
IPR008921	Homologous_superfamily	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051314	Family	AAA ATPase RarA/MGS1/WRNIP1	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13779	WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0009378	Molecular Function	four-way junction helicase activity	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0000731	Biological Process	DNA synthesis involved in DNA repair	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006261	Biological Process	DNA-templated DNA replication	Interproscan
GO:0008047	Molecular Function	enzyme activator activity	Interproscan
GO:0017116	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07478	ycaJ; putative ATPase	-	Replication and repair	-	deepkoala