Gene detail

Detailed information of scaffold1081.g5.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1081:36284...74044
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1081.g5.t2

ttttaaagtgaagcagggatttagaatttcttgtctcatcgtcgagtaaattccattcgaataatgtattatgaaaatacgtgctagcaaaacgggccgttctgctgactggttgttcaaaataaaagggatttctcagactgtactgcaattgtcgctcttggggtagttcgctatacaagtattcaggtgatttggatttgataagggagaagaaatgacacaatctacgataccaccttctatcatacaatgtttcccaacctagctcattaaacagtctctgcctgtttgtacctctccatgttccagtcactgctagtgcagcaagatactgcgttcgttcaagcttttgtgtaaaggccaagcgcatgttgttccataaaagcggtcccctataactaaatgatgtccggcctttctcggtgcttgcccttggtattgacagggtatctctctttgcatatctgtgtatgttcttggtcacatatgaattagcctgtctgtcgtctccatgatatgatttgtgcacaaaggttaaaatctttcttttgtaaatgtaatctaatgggtcccaagatacagtggcaagcacgttttcattgcttacatttcttggcaagttgtgaattagtttagcagctcggatgtgagtcttttcaatttcagtcatcagtgctggtgaacacgttccccagactgccatcccataggaaactgatgatatgatggtcttaaagtaaatttcctctttgactgttacagttcaaatatgggagcaagccgcgcgcaggcgcaggaagatcatttgcgagttgcgagagcactcgttaataggacataggacacatttgatttggcagtttagatagccttcgaagagaaacgatttcgaacacgtttgaaagtttatgaagagataacttggtgaccaaatggcggtttcatcgcatggttcattggggatgaagacgaatcaaagggaatcggcaaggattaagagatcaagatacaaagagagcagagaaggtgaccttttgtcattggtggctgaggatccacctggatttgaggcacgatcagtttctgcagagataggaatcggagttttcacagccaaagatttccatgctggtgatattctccttctttatgaaggtgaactaatcagtggcgatgaaggaaggagacgagaacaactgtatggggattcttgccgctgttatatgtatttttttatgcatgaaggccaacaatgctgcattgatgctacctttcccagtggaaggataggtagactggtgaatgattccaaacatccaaactccgtcatgaaaaaagttatgataggatcatcaccccacttggcactgtatgccctgacaaacattgttaaaggcactgaactccgctatgattatggggtatcaaatcttccatggagaaagaaaaagaaagaagctttggttaacaagaagcatagaggtacagaattacttatgaagagaagaaagtgcactgacgacttgcaaaaggaagattctgatagcactaaaaagcataaagaagatgcttttggagagcaaaacttaaaaacttggtcgcttactaaaaaacaacgagaaagactagcagtagcacagagtaatatggacagagcgatgcctggcataagaaggaaagataaaaagcgaagtgaatgggaaaatgaagatgcccatgaacaagaaactcaaaaggaagattctgatagcactaaaaaggaaaatgaagatgccattgaacgagaaaacgttgaacacacaagagaacagcagagtaagatatgtgaaaaggaaacaaatgtgcaatacgaaaaatcgtttgatatctgtgaacgtgcacaagtcattggatatggagttgatgctatctttatgaagtttccttgctcttcagagacaagaatgaaggaaaatgaagatgcccttggacaagaagaccaaaaggaagattctgatagcactaaaaagcaaaaggaagattctgacagcactaaaaagcataaagaagatgcttttggagaacgaaacgtgaagtacgaagattcagaagaaggtgaagatagggtgttggatcctgattacgaacagccgagcgacagtgattccatgcagggttcaattgaccttttcgaagatgaaaagaagctggtcaaagatgaaaagaagcagggggtgcacaagatggctgaagtagcagcttcttctaaaagaaagcgagaaaccaaatgccccatcaagtcttgcggaaagctaaggtacgaccttccacgtcatatgagactagtccacaattgggccgatgacagtgcaaagaacgtgaaagcacagtatgggcttaggaaggaatacgtcagcgcaaaacataaaaagcctggcagtaagatggactaccacaaaacaaaggctgacggatgcaaggccgtgacaaaagtaatgtcaaggcatctaaagaagagccataacataagtcctaatgacccacaatacaaagttctgcttaaacgtgcaattacaattgaccatcgaaagaagaagcaggcaccggaaaaaatggtcgctatgaagcagactctcattccgttgcttttgcaagaggatgatttgagttcagactcagaagattcatcttttcaagaagacgttcctgtttgcaacaataatagtgaacacttaacaacggatgaggagccacttgatgatgatagctctcaatcatcttattcctcgaatgcatctcaagagagtgtttcttcaagctctgatgtgagatccaacaaagctatagcaaaggacttgttgaactcgttttaccaatttctaacctcggccgactcagggaacaaggatgaaaggtcagcaaagcagtgtcaggcccgtataaagaaagtgctaaaagtcgtggatcaagacatggacatccaaacgtatgatatggccacaatcactagcctaaagagtaaaatcaaggtttggaagaaagcatttgtaacgagagtaaagatcgcagacatggccaagatggaaagagagaggcgttcaaaggttacacctgaacaaatcttgaagtttgagcaaagttttattgtacgagaagctataaaggtgtttggcagatttggagaaggaaaaagatgtgaaataactcagtcacgtttcacgagtgccagagatttcctgatgacagaaatcttgatcgacaatggccatagagcaggagttatagcgaatatgacgatggctgaatatagaggcgtcgaagccaggaaaggaagacatacgatcaccgttttcaagcataaagaggctagagctggacccatcagagttactttggctccaaggctgttcgaatggctcactatctttgtggaacattttcgatcaagcgttatatctgacgaaagttcaaatgctacagtcttcgtgacctggactggggagaaattcaccaattctggaggagttacgaacgcttgctctgcactctggtcgaaggctggtatggaaggaagagtcggtgccaataagtttcgaaaagcagcagtttcagccacaagggaatcacgaccaggcgatgaacagatccataaagacttggcaaatctcatgggtcacaaaaagacgacagcagatcgatattactacctagaagaaaagatagaatcttccgatcgagctgccgaagccctcccagcaataatgcgccgttctgcccccgaggagccacatgataacaaggaggaaagagttcaagagcaaattgaaagaaaacgganaaggctggtatggaaggaagagtcggtgccaataagtttcgaaaagcagcagtttcagccacaatggaatcacaaccaggcgatgaaaagatccataaagacttggcaaatctcatgggtcacaaaaagacgacagcagatcgatattactacctagaagaaaagatagaatcttcc

Transcript

scaffold1081.g5.t2

ttttaaagtgaagcagggatttagaatttcttgtctcatcgtcgagtaaattccattcgaataatgtattatgaaaatacgtgctagcaaaacgggccgttctgctgactggttgttcaaaataaaagggatttctcagactgtactgcaattgtcgctcttggggtagttcgctatacaagtattcaggtgatttggatttgataagggagaagaaatgacacaatctacgataccaccttctatcatacaatgtttcccaacctagctcattaaacagtctctgcctgtttgtacctctccatgttccagtcactgctagtgcagcaagatactgcgttcgttcaagcttttgtgtaaaggccaagcgcatGTTGTTCCATAAAAGCGGTCCCCTATAACTAAATGATGTCCGGCCTTTCTCGGTGCTTGCCCTTGGTATTGACAGGGTATCTCTCTTTGCATATCTGTGTATGTTCTTGGTCACATATGAATTAGCCTGTCTGTCGTCTCCATGATATGATTTGTGCACAAAGGTTAAAATCTTTCTTTTGTAAATGTAATCTAATGGGTCCCAAGATACAGTGGCAAGCACGTTTTCATTGCTTACATTTCTTGGCAAGTTGTGAATTAGTTTAGCAGCTCGGATGTGAGTCTTTTCAATTTCAGTCATCAGTGCTGGTGAACACGTTCCCCAGACTGCCATCCCATAGGAAACTGATGAtatgatggtcttaaagtaaatttcctctttgactgttacagTTCAAATATGGGAGCAAGCCGCGCGCAGGCGCAGGAAGATCATTTGCGAGTTGCGAGAGCACTCGTTAATAGGACATAGGACACATTTGATTTGGCAGTTTAGATAGCCTTCGAAGAGAAACGATTTCGAACACGTTTGAAAGTTTATGAAGAGATAACTTGGTGACCAAATGGCGGTTTCATCGCATGGTTCATTGGGGATGAAGACGAATCAAAGGGAATCGGCAAGGATTAAGAGATCAAGATACAAAGAGAGCAGAGAAGGTGACCTTTTGTCATTGGTGGCTGAGGATCCACCTGGATTTGAGGCACGATCAGTTTCTGCAGAGATAGGAATCGGAGTTTTCACAGCCAAAGATTTCCATGCTGGTGATATTCTCCTTCTTTATGAAGGTGAACTAATCAGTGGCGATGAAGGAAGGAGACGAGAACAACTGTATGGGGATTCTTGCCGCTGTTATATGTATTTTTTTATGCATGAAGGCCAACAATGCTGCATTGATGCTACCTTTCCCAGTGGAAGGATAGGTAGACTGGTGAATGATTCCAAACATCCAAACTCCGTCATGAAAAAAGTTATGATAGGATCATCACCCCACTTGGCACTGTATGCCCTGACAAACATTGTTAAAGGCACTGAACTCCGCTATGATTATGGGGTATCAAATCTTCCATGGAGAAAGAAAAAGAAAGAAGCTTTGGTTAACAAGAAGCATAGAGGTACAGAATTACTTATGAAGAGAAGAAAGTGCACTGACGACTTGCAAAAGGAAGATTCTGATAGCACTAAAAAGCATAAAGAAGATGCTTTTGGAGAGCAAAACTTAAAAACTTGGTCGCTTACTAAAAAACAACGAGAAAGACTAGCAGTAGCACAGAGTAATATGGACAGAGCGATGCCTGGCATAAGAAGGAAAGATAAAAAGCGAAGTGAATGGGAAAATGAAGATGCCCATGAACAAGAAACTCAAAAGGAAGATTCTGATAGCACTAAAAAGGAAAATGAAGATGCCATTGAACGAGAAAACGTTGAACACACAAGAGAACAGCAGAGTAAGATATGTGAAAAGGAAACAAATGTGCAATACGAAAAATCGTTTGATATCTGTGAACGTGCACAAGTCATTGGATATGGAGTTGATGCTATCTTTATGAAGTTTCCTTGCTCTTCAGAGACAAGAATGAAGGAAAATGAAGATGCCCTTGGACAAGAAGACCAAAAGGAAGATTCTGATAGCACTAAAAAGCAAAAGGAAGATTCTGACAGCACTAAAAAGCATAAAGAAGATGCTTTTGGAGAACGAAACGTGAAGTACGAAGATTCAGAAGAAGGTGAAGATAGGGTGTTGGATCCTGATTACGAACAGCCGAGCGACAGTGATTCCATGCAGGGTTCAATTGACCTTTTCGAAGATGAAAAGAAGCTGGTCAAAGATGAAAAGAAGCAGGGGGTGCACAAGATGGCTGAAGTAGCAGCTTCTTCTAAAAGAAAGCGAGAAACCAAATGCCCCATCAAGTCTTGCGGAAAGCTAAGGTACGACCTTCCACGTCATATGAGACTAGTCCACAATTGGGCCGATGACAGTGCAAAGAACGTGAAAGCACAGTATGGGCTTAGGAAGGAATACGTCAGCGCAAAACATAAAAAGCCTGGCAGTAAGATGGACTACCACAAAACAAAGGCTGACGGATGCAAGGCCGTGACAAAAGTAATGTCAAGGCATCTAAAGAAGAGCCATAACATAAGTCCTAATGACCCACAATACAAAGTTCTGCTTAAACGTGCAATTACAATTGACCATCGAAAGAAGAAGCAGGCACCGGAAAAAATGGTCGCTATGAAGCAGACTCTCATTCCGTTGCTTTTGCAAGAGGATGATTTGAGTTCAGACTCAGAAGATTCATCTTTTCAAGAAGACGTTCCTGTTTGCAACAATAATAGTGAACACTTAACAACGGATGAGGAGCCACTTGATGATGATAGCTCTCAATCATCTTATTCCTCGAATGCATCTCAAGAGAGTGTTTCTTCAAGCTCTGATGTGAGATCCAACAAAGCTATAGCAAAGGACTTGTTGAACTCGTTTTACCAATTTCTAACCTCGGCCGACTCAGGGAACAAGGATGAAAGGTCAGCAAAGCAGTGTCAGGCCCGTATAAAGAAAGTGCTAAAAGTCGTGGATCAAGACATGGACATCCAAACGTATGATATGGCCACAATCACTAGCCTAAAGAGTAAAATCAAGGTTTGGAAGAAAGCATTTGTAACGAGAGTAAAGATCGCAGACATGGCCAAGATGGAAAGAGAGAGGCGTTCAAAGGTTACACCTGAACAAATCTTGAAGTTTGAGCAAAGTTTTATTGTACGAGAAGCTATAAAGGTGTTTGGCAGATTTGGAGAAGGAAAAAGATGTGAAATAACTCAGTCACGTTTCACGAGTGCCAGAGATTTCCTGATGACAGAAATCTTGATCGACAATGGCCATAGAGCAGGAGTTATAGCGAATATGACGATGGCTGAATATAGAGGCGTCGAAGCCAGGAAAGGAAGACATACGATCACCGTTTTCAAGCATAAAGAGGCTAGAGCTGGACCCATCAGAGTTACTTTGGCTCCAAGGCTGTTCGAATGGCTCACTATCTTTGTGGAACATTTTCGATCAAGCGTTATATCTGACGAAAGTTCAAATGCTACAGTCTTCGTGACCTGGACTGGGGAGAAATTCACCAATTCTGGAGGAGTTACGAACGCTTGCTCTGCACTCTGGTCGAAGGCTGGTATGGAAGGAAGAGTCGGTGCCAATAAGTTTCGAAAAGCAGCAGTTTCAGCCACAAGGGAATCACGACCAGGCGATGAACAGATCCATAAAGACTTGGCAAATCTCATGGGTCACAAAAAGACGACAGCAGATCGATATTACTACCTAGAAGAAAAGATAGAATCTTCCGATCGAGCTGCCGAAGCCCTCCCAGCAATAATGCGCCGTTCTGCCCCCGAGGAGCCACATGATAACAAGGAGGAAAGAGTTCAAGAGCAAATTGAAAGAAAACGGANAAGGCTGGTATGGAAGGAAGAGTCGGTGCCAATAAGTTTCGAAAAGCAGCAGTTTCAGCCACAATGGAATCACAACCAGGCGATGAAAAGATCCATAAAGACTTGGCAAATCTCATGGGTCACAAAAAGACGACAGCAGATCGATATTACTACCTAGAAGAAAAGATAGAATCTTCC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856 all species →	SET	SET domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR051760 all species →	Family	Histone-lysine N-methyltransferase KMT5A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46167 all species →	N-LYSINE METHYLTRANSFERASE KMT5A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005700 all species →	Cellular Component	polytene chromosome	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0034771 all species →	Biological Process	obsolete histone H4-K20 monomethylation	Interproscan
GO:0042799 all species →	Molecular Function	histone H4K20 methyltransferase activity	Interproscan
GO:0043516 all species →	Biological Process	regulation of DNA damage response, signal transduction by p53 class mediator	Interproscan
GO:0140110 all species →	Molecular Function	transcription regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold1081.g5.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.