Detailed information of scaffold1087.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1087:11527...41934
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00097
all species →		zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR018957
all species →		DomainZinc finger, C3HC4 RING-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR013956
all species →		FamilyE3 ubiquitin ligase Bre1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23163
all species →		RING FINGER PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0033503
all species →		Cellular ComponentHULC complexInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0071894
all species →		Biological Processobsolete histone H2B conserved C-terminal lysine ubiquitinationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10696BRE1; E3 ubiquitin-protein ligase BRE1EC:2.3.2.27
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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