Gene detail

Detailed information of scaffold11.g26.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold11:390047...400574
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold11.g26.t2

caaagggtttttgtgtttttcccgccaaatctcaatcaatttgatgcgcaggcgcactagtgacacgcgcgccaatagacaaaaattgaaacaagacaaaatgatgatgatgcgacgagaaagtcatgcactccaagaaatccaagctttatgaggtagagagaatagctggaagacgtaacgctgcaggaaaggaagaatttttggttcactggaaaggttacaagtcaactgaagccacttgggagccaagtgaaaatttaaccttttgtgaagaggttgtaaaaagttttgtatcaaggattgcaccaataccagggggaattccatgcaacatttctgagtttataaacaacaagaagaaaactgtgcatgtgaaacaaatcctcttgaataaaagaggcagaccaaggaaaaataaagaattgtcaaaaaaagagatctcacttttcaagaaaatggtgggcagaaaatcaaagaagtcaatgagtgagacagagaggctgatcagggacactttggttcacgaatcaaaaagtatgtcacatgtcaatcaacatatggttgttaatgggttgttagacatgtcaaagccagaatcacacaaacacacaaacttaagacatagcagagtaaacggtcttttgaaagatcataatggaaacacaaagaaaagaaagttagatgaaggggcagaatatgcgtcagatagttgccacaaaatggagagaaggcagagctatcacacaaatggcacgtcgatcatggctccaattagtaataattggaatttgaaacacccattgcgagatgctggagaaggggatcatattatttgccataggactgatgattatatgaagattgttttgaacaacactgcaagacataatgtcctcactacaaatatgatggagacaatcacacagtgtttacaaacggcagagggagacaaatcagttcatgcagttttactgagaaataatggagatcatttttgcagtggtattgattattctgaaatcattgattgcacagatgaacatgaaattaaatcaaaagcaagtgatatctgcagagcaattaggtcattgactgaagcactgattcactttccgaaacccatcctaacagcagcgaatggtgtttgtctggagtatggagtagctcttgttgcattgagtgatctaacattcacgtccagtaagacacgatttcagctgacgttctccgaactcaatttgacgccgattggatgtctgtcttacttgttgccaaagcttgttggacctgctatggcaaacgcaatgatattccttggcgaagactatcgtgctactgctgcatatgatcgagggctcatcaatgacatttatggcgtgcattcattcgatgaagatatcgacaagcgaatcagacaacttgcttctggccagattcaggtgatggaaggaacgaaacgaatgatgcgtgactacgatctcgaaactgtgcaacgagcttgcgaccgagagatgaaagtgtttaaaagaaatatcagatctgagagctgtcacaaaaaactcacagagaattggagtgtttcgataaacctttatgggacagcttgattacagcgataaatcgattatcgagtgtttgatactcgccatccaaggttggtaaacgcaggcgtcgaaccctcgcaaaactttgatgaaatttattgtgtaaggcctagtttaaaggggctccgtcgtcaagcagtaaacaaatccgtaaagtcgcacgtttcggggattatccattgttcatccattgttctctgaagtttgtttggtggcttcacccaagccaccaaggagcgaccgttaaaaatccacttttatccgagcaatcgtagaagatatgaatgtttggtttgttccttagtggagtacaatgattaatgcccaaacagcaactttcattttgaaaaaatacgaaaatcctgtgtgatatcacctttcaaaaaactgcaaaaatcatcgttttgtttacattttgacgacggagcccctttaagca

Transcript

scaffold11.g26.t2

CAAAGGGTTTTTGTGTTTTTCCCGCCAAATCTCAATCAATTTGATGCGCAGGCGCACTAGTGACACGCGCGCCAATAGACAAAAATTGAAACAAGACAAAATGATGATGATGCGACGAGAAAGTCATGCACTCCAAGAAATCCAAGCTTTATGAGGTAGAGAGAATAGCTGGAAGACGTAACGCTGCAGGAAAGGAAGAATTTTTGGTTCACTGGAAAGGTTACAAGTCAACTGAAGCCACTTGGGAGCCAAGTGAAAATTTAACCTTTTGTGAAGAGGTTGTAAAAAGTTTTGTATCAAGGATTGCACCAATACCAGGGGGAATTCCATGCAACATTTCTGAGTTTATAAACAACAAGAAGAAAACTGTGCATGTGAAACAAATCCTCTTGAATAAAAGAGGCAGACCAAGGAAAAATAAAGAATTGTCAAAAAAAGAGATCTCACTTTTCAAGAAAATGGTGGGCAGAAAATCAAAGAAGTCAATGAGTGAGACAGAGAGGCTGATCAGGGACACTTTGGTTCACGAATCAAAAAGTATGTCACATGTCAATCAACATATGGTTGTTAATGGGTTGTTAGACATGTCAAAGCCAGAATCACACAAACACACAAACTTAAGACATAGCAGAGTAAACGGTCTTTTGAAAGATCATAATGGAAACACAAAGAAAAGAAAGTTAGATGAAGGGGCAGAATATGCGTCAGATAGTTGCCACAAAATGGAGAGAAGGCAGAGCTATCACACAAATGGCACGTCGATCATGGCTCCAATTAGTAATAATTGGAATTTGAAACACCCATTGCGAGATGCTGGAGAAGGGGATCATATTATTTGCCATAGGACTGATGATTATATGAAGATTGTTTTGAACAACACTGCAAGACATAATGTCCTCACTACAAATATGATGGAGACAATCACACAGTGTTTACAAACGGCAGAGGGAGACAAATCAGTTCATGCAGTTTTACTGAGAAATAATGGAGATCATTTTTGCAGTGGTATTGATTATTCTGAAATCATTGATTGCACAGATGAACATGAAATTAAATCAAAAGCAAGTGATATCTGCAGAGCAATTAGGTCATTGACTGAAGCACTGATTCACTTTCCGAAACCCATCCTAACAGCAGCGAATGGTGTTTGTCTGGAGTATGGAGTAGCTCTTGTTGCATTGAGTGATCTAACATTCACGTCCAGTAAGACACGATTTCAGCTGACGTTCTCCGAACTCAATTTGACGCCGATTGGATGTCTGTCTTACTTGTTGCCAAAGCTTGTTGGACCTGCTATGGCAAACGCAATGATATTCCTTGGCGAAGACTATCGTGCTACTGCTGCATATGATCGAGGGCTCATCAATGACATTTATGGCGTGCATTCATTCGATGAAGATATCGACAAGCGAATCAGACAACTTGCTTCTGGCCAGATTCAGGTGATGGAAGGAACGAAACGAATGATGCGTGACTACGATCTCGAAACTGTGCAACGAGCTTGCGACCGAGAGATGAAAGTGTTTAAAAGAAATATCAGATCTGAGAGCTGTCACAAAAAACTCACAGAGAATTGGAGTGTTTCGATAAACCTTTATGGGACAGCTTGATTACAGCGATAAATCGATTATCGAGTGTTTGATACTCGCCATCCAAGGTTGGTAAACGCAGGCGTCGAACCCTCGCAAAACTTTGATGAAATTTATTGTGTAAGGCCTAGTttaaaggggctccgtcgtcaagcagtaaacaaatccgtaaagtcgcacgtttcggggattatccattgttcatccattgttctctgaagtttgtttggtggcttcacccaagccaccaaggagcgaccgttaaaaatccacttttatccgagcaatcgtagaagatatgaatgtttggtttgttccttagtggagtacaatgattaatgcccaaacagcaactttcattttgaaaaaatacgaaaatcctgtgtgatatcacctttcaaaaaactgcaaaaatcatcgttttgtttacattttgacgacggagcccctttaaGCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00378 all species →	ECH_1	Enoyl-CoA hydratase/isomerase	Domain	Interproscan
PF00385 all species →	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR000953 all species →	Domain	Chromo/chromo shadow domain	Interproscan
IPR001753 all species →	Family	Enoyl-CoA hydratase/isomerase	Interproscan
IPR051053 all species →	Family	Enoyl-CoA hydratase/isomerase and chromodomain-containing protein	Interproscan
IPR023780 all species →	Domain	Chromo domain	Interproscan
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43684 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold11.g26.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.