Gene detail

Detailed information of scaffold110.g28.t1 in Morbakka virulenta

Genomic Location: scaffold110:1200908...1215479
NR annotation: XP_037547750.1, retinal homeobox protein Rx3 [Nematolebias whitei]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold110.g28.t1

AGATACATTCAGCGATTGTGCAACAAATTCTCTTAGTGTAATATTACTTGTTCATATTGTTTAACAGACACATACTGTCAGAAAAACTGCCTTTTAATGGAAAACATGGCAAATAAACAAGAGTCCGATGGTACAATTTCAACTCACCAAAACTACGATTACTCAATTAGTGCCCTCCTGGGATTGAACCAAGATCAAAGAGATTGTGAAAGATACACCCAAGATAGTCCAACACCATCCAGCGAAGACCACGAAGAAGATCGAGATAAATTTTCAGATACAGATGATCACGATCCCGAAGATTCGCAGCTTTGTCAATCGAAAAAGAATCGACGAAACAGAACGACTTTTACAACCTTCCAATTACATGAGTTGGAAAAGGCATTTGAAAGGTCTCACTATCCAGACATTTATACAAGAGAAGATCTTGCAAACAGAATCAACTTACCTGAAGTCCGTGTGCAAGTTTGGTTTCAAAACAGGAGAGCAAAATGGCGACGCCAAGAAAAATCTCATACTCAGGATTACAAAAGATCAGATTTAGAGTTGCCTGCCTTGCTTAAGTTTACCTATCCATACGGACTACCTGTTACATCAAAATATCCAATTGGAGGAGGTCTTAAACAAGTATCTAATATAATTCCAGCTATTTCAAGACCAACGTCGGAATCTTCAtgttgttgttgttgttgtGATTATTTCACTCCCCCAGAGGAAGGCAGGAGTTTTGAAAAGACAGTAAGTGATCATAATCAAACGATATCTGTATCAAAGTCACCTAAATATTCTGTTTGCATCGGATCAAATGGCTCTGAAAGTGTGTATCCTTGTTGTAAACCTACTGGTGGTGCTGTTGCTAAAGAAAACCATTCTTATCGTCCCGACAGCCCATACAGGTTTCCATACAATTCAAGTTGCCACACGAAGTCTATGGAGACATAAATTTTAATGACATTACTTTTCCAGAAATCTCTATCCAAGAAAAAATACCCTAAAGCTATGCATCCACTTTTGGGTCCAAGAAGCTAAGGGAAATGGTAGATATTTTTACTTTGACAGTAATATATAATATAATGTAGAGTATAGGGTGAGTAGATGCTTCCAGTACCTATGAGTTATTTAGAGCATAATTTATTACTGATCGGAGATTCATAATGAAGGACAAACTGTTTTGGGGCTCAGGGCATGCATATTTAATAAAGCAATGTTTTATTGCAACAAGTTTTCTCTTTTCCCAATAGGTCAACTTTCTCACTAGAATAGTAGCTCTTTCGTTTAGCTCTTCTTTCGTTTAGCTAGGATTAGTAAAAACTTTGAATAAATATTAGTATACTATGGACGATTATACAAATGAAACACTATATAAATAGAGGAGCATAAAAGTTCTAATAATTCATATAATTTTCCTTAGGATAACATTGATTGATTTATGTGCAAGGTTTACAAAGCCATGAGGTTCCTCGCTTAGAATTCCCTGCAAACCCCTCTAAGAATACGGGGCTAGAAATAAATCACAAGGCTAGTGTAACTTTTATCAATCAGCTGGAGACAACTTTTTTTATTGCAAATGTAAAAACTTTCATTTTTAGGATCTTGTGTACAAGTGGTGGTAAAGTGATGCAAAAATCTAAACTATGTTTATATTCACAAAAAAAATTTGTGGGGACATAAACCTTAACAGTTGGTGAttaaccctttaagggacaatttttttctgtttcagaaaaaatatttgaactattttggagcctagaaatcaaactacatctaaatattagaaaacagccctcctattgagagccagacattgttgcgtatatgctacactgccccttgacggagagctgaaaattctgttggaataatttgtggcaaatatgctacacggtcccttaaaaggttaaAGGATACCTTTAAGACGTTCTTTGGTTTCTGTTCTATTTTCAGAAGACATTTAAGGCAAAGATTTAGCTATATAAATGGAACATTAGAAAGCCAACTGTCAGTGTAACTATTAATTGTAAGCCAGAGTTAAAGATACCCTACAAACTGTAAAAGTCGTTTCACTTCACATGGGAATTACTCTATTTGAAGAGATGCAGAACTAAATTTAGTCAAGTTGC

Protein

Uniprot

Uniprot term	Description
Q9I9A2	Retinal homeobox protein Rx2 OS=Oryzias latipes OX=8090 GN=rx2 PE=2 SV=1
Q9PVY0	Retinal homeobox protein Rx1 OS=Gallus gallus OX=9031 GN=RX1 PE=2 SV=1
Q9JLT7	Retinal homeobox protein Rx OS=Rattus norvegicus OX=10116 GN=Rax PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR050649	Family	Paired Homeobox Transcription Factors	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24329	HOMEOBOX PROTEIN ARISTALESS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09332	RAX, RX; retina and anterior neural fold homeobox protein	-	Transcription factors	ko03000	deepkoala