Gene detail

Detailed information of scaffold110.g5.t2 in Aurelia aurita

Genomic Location: scaffold110:67816...83044
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold110.g5.t2

ggtattctgacaaattgcaggggaagagtcaaagtgcaaaatttttcaatacgcagtgttgcttctcagaaatggaggccaatgtagtgacaactaagattgcgtcagcacctacaacaccaacaacagcaacaacacctgacaatcggcccacgtcattgattgatcaatatcgttacccagccatgcctcttcagccgctgttttcccagccgccaacaatgtcgaatgtcgctttccaaagcatcccagctggcaatatagggaacgtgcaaggaatcccccctggttcaatcgcagtgtttcctacaagtccgcattcacaagtaccgcataacctgcagcatatgcttgtaaagccgaatccagtacagggaaaagcaggggggcttgcacaaggaccaaatggaattattcacacgatatatccagcacctgtatatgcgacaaatgctatcccctcatctacacccaatgctacaccaaatgcaactggatatcgtttttcaagcgcaccaatcccagtgcgacctacacgagtttatggacctcttaatcaaacaaacttcaatcccatgcagcagcaggctatacattacaattacaacatgtctccttaccagtccccgatggattcgccgctgacgtcgccgtttacgtcaccgtcgccttcgccgaaatcttcgccattaccttccccgagattatctccgttcccgtctccggtcgaaagtccgatgtttaggaagaaatttactggagagcgttcccttagtagaagaaattctgagcaatatgcatcagtttatgattggttgaaaagtctgcgtttacataaatatgctgatatattcaaagattacacttttgacctgatgaaagacctttccgacgacgatcttgcgcagcttggtctcactcaaggagcaaggaagaaattcaaactgcatatttccagtcttgtggaaaaaggcttcaaaggtttcggtaaatttccaagcacctttccggaccatgggtcaagaccaagctcaactggcagttacgtagagacaccaagaaaagcttctagcacatcggaccctaaaatgattccggttagctcacccggatctaccacccggactttctcagccagtgttggcaacgaaccaaaatttgatacaaaagactctgcggaacatggcacaagtttagagggaaattcccaggagaagtcattatcatctagccaaaaatcagaaggagaattgagaagtgatctgatacgaagagaacaagaacattctggagagaatttaagtgatgaaggaagtcaaggaacatcagaaagtatcgatgatttgtctgacgatgaggtttttatgacacgaagaccaacagtgattgagaataaagattgtcctttggtattagcttcatgttataattgtgggtctaaagatcattttggtgagcagtgtgtagaacaaaatatggaaggagagacgtaccaacgttacggttatcgattgaagtacgacaatgaacgattaaaagaagaccaaaggtgacaccagacttagtcacagatagatagatatctagagagatcgtggtttttataggtttggacagatttttaagggttcttatgaaaaattgtcgtgctgtagtttgtagaacaattaccaagagatggcgacaaaaacgaaatcaaacaacagtttcgtacgtatagctgaaacgagtcattctcgcaggaatctgcgaatttgtcgcgctccctagtacattaggcagtgattattgctcgcaaatgtctcatatatagtctcctcatttagaaccacaaagtcttgaacagtgccttattttctaaacagtgcctctgctcttaaagctgcaagtttttggggcatttggtgatagccaaggtttcgtgcctttaattgcctgcaaatagattgacctattctcgtggtagatttttgacagttgccaacttgcaatatgcttctctgtagcaccggggtaagagtggagttatgccaatgcgaggaaggactaaggagcacaaggctgtcgcatcgctgcacgatgttcttcgggcaagtaagctccaaaggttgcctggtatgctgaaaccttacgctttgagataacttggctcgataacataaagcgctgtccgaacttctttgatttgtaatccgtgtccagactttgtcggtttttattcctcgacgttctttcgccggcagttcattttgatataaagatcacaaaaagacagtcggcaaaaagaagttatctttgggtgcaataaaacagataggagaacgggcatgcaactcaatcaaatacattattttatctcattattttttgctgtctgaatttataaattctctttgcaatgaattgtcgtctaggaaacagcagcacttgtgtaaactcgtcgaagagaggatgaatgtttttaaagttgtctgcagtttagcggtaggaaatacagtcttgttaaatagtttaaatgagacgggattcatcaaacagatatttgcaaatgataggcctccaatttcaatcaaatttgaatttgcaaagcactgcagaagtttgttttagcatggcagaattgcgttatcgtcacgacgattatgtcttagaagatccagcccatatccagcaattcaggcgaataatgataggtttaacctcaggtaccggggatgtgccatttttaaggggtacttttttcttcaaatacggaagtacgggtatgaattttcaccaacgtgggtagggacccggaatagataataacgctaaag

Transcript

scaffold110.g5.t2

GGTATTCTGACAAATTGCAGGGGAAGAGTCAAAGTGCAAAATTTTTCAATACGCAGTGTTGCTTCTCAGAAATGGAGGCCAATGTAGTGACAACTAAGATTGCGTcagcacctacaacaccaacaacagcaacaacaCCTGACAATCGGCCCACGTCATTGATTGATCAATATCGTTACCCAGCCATGCCTCTTCAGCCGCTGTTTTCCCAGCCGCCAACAATGTCGAATGTCGCTTTCCAAAGCATCCCAGCTGGCAATATAGGGAACGTGCAAGGAATCCCCCCTGGTTCAATCGCAGTGTTTCCTACAAGTCCGCATTCACAAGTACCGCATAACCTGCAGCATATGCTTGTAAAGCCGAATCCAGTACAGGGAAAAGCAGGGGGGCTTGCACAAGGACCAAATGGAATTATTCACACGATATATCCAGCACCTGTATATGCGACAAATGCTATCCCCTCATCTACACCCAATGCTACACCAAATGCAACTGGATATCGTTTTTCAAGCGCACCAATCCCAGTGCGACCTACACGAGTTTATGGACCTCTTAATCAAACAAACTTCAATCCCATGCAGCAGCAGGCTATACATTACAATTACAACATGTCTCCTTACCAGTCCCCGATGGATTCGCCGCTGAcgtcgccgtttacgtcaccgtcgccttcgccgaaatcttcgccattaccttccccgagattatctccgttcccgtctccgGTCGAAAGTCCGATGTTTAGGAAGAAATTTACTGGAGAGCGTTCCCTTAGTAGAAGAAATTCTGAGCAATATGCATCAGTTTATGATTGGTTGAAAAGTCTGCGTTTACATAAATATGCTGATATATTCAAAGATTACACTTTTGACCTGATGAAAGACCTTTCCGACGACGATCTTGCGCAGCTTGGTCTCACTCAAGGAGCAAGGAAGAAATTCAAACTGCATATTTCCAGTCTTGTGGAAAAAGGCTTCAAAGGTTTCGGTAAATTTCCAAGCACCTTTCCGGACCATGGGTCAAGACCAAGCTCAACTGGCAGTTACGTAGAGACACCAAGAAAAGCTTCTAGCACATCGGACCCTAAAATGATTCCGGTTAGCTCACCCGGATCTACCACCCGGACTTTCTCAGCCAGTGTTGGCAACGAACCAAAATTTGATACAAAAGACTCTGCGGAACATGGCACAAGTTTAGAGGGAAATTCCCAGGAGAAGTCATTATCATCTAGCCAAAAATCAGAAGGAGAATTGAGAAGTGATCTGATACGAAGAGAACAAGAACATTCTGGAGAGAATTTAAGTGATGAAGGAAGTCAAGGAACATCAGAAAGTATCGATGATTTGTCTGACGATGAGGTTTTTATGACACGAAGACCAACAGTGATTGAGAATAAAGATTGTCCTTTGGTATTAGCTTCATGTTATAATTGTGGGTCTAAAGATCATTTTGGTGAGCAGTGTGTAGAACAAAATATGGAAGGAGAGACGTACCAACGTTACGGTTATCGATTGAAGTACGACAATGAACGATTAAAAGAAGACCAAAGGTGACACCAGACTTAGTCACagatagatagatatctagagagatCGTGGTTTTTATAGGTTTGGACAGATTTTTAAGGGTTCTTATGAAAAATTGTCGTGCTGTAGTTTGTAGAACAATTACCAAGAGATGGCGACAAAAACGAAATCAAACAACAGTTTCGTACGTATAGCTGAAACGAGTCATTCTCGCAGGAATCTGCGAATTTGTCGCGCTCCCTAGTACATTAGGCAGTGATTATTGCTCGCAAATGTCTCATATATAGTCTCCTCATTTAGAACCACAAAGTCTTGAACAGTGCCTTATTTTCTAAACAGTGCCTCTGCTCTTAAAGCTGCAAGTTTTTGGGGCATTTGGTGATAGCCAAGGTTTCGTGCCTTTAATTGCCTGCAAATAGATTGACCTATTCTCGTGGTAGATTTTTGACAGTTGCCAACTTGCAATATGCTTCTCTGTAGCACCGGGGTAAGAGTGGAGTTATGCCAATGCGAGGAAGGACTAAGGAGCACAAGGCTGTCGCATCGCTGCACGATGTTCTTCGGGCAAGTAAGCTCCAAAGGTTGCCTGGTATGCTGAAACCTTACGCTTTGAGATAACTTGGCTCGATAACATAAAGCGCTGTCCGAACTTCTTTGATTTGTAATCCGTGTCCAGACTTTGTCGGTTTTTATTCCTCGACGTTCTTTCGCCGGCAGTTCATTTTGATATAAAGATCACAAAAAGACAGTCGGCAAAAAGAAGTTATCTTTGGGTGCAATAAAACAGATAGGAGAACGGGCATGCAACTCAATCAAATACATTATTTTATCTCATTATTTTTTGCTGTCTGAATTTATAAATTCTCTTTGCAATGAATTGTCGTCTAGGAAACAGCAGCACTTGTGTAAACTCGTCGAAGAGAGGATGAATGTTTTTAAAGTTGTCTGCAGTTTAGCGGTAGGAAATACAGTCTTGTTAAATAGTTTAAATGAGACGGGATTCATCAAACAGATATTTGCAAATGATAGGCCTCCAATTTCAATCAAATTTGAATTTGCAAAGCACTGCAGAAGTTTGTTTTAGCATGGCAGAATTGCGTTATCGTCACGACGATTATGTCTTAGAAGATCCAGCCCATATCCAGCAATTCAGGCGAATAATGATAGGTTTAACCTCAGGTACCGGGGATGTGCCATTTTTAAGGGGTACTTTTTTCTTCAAATACGGAAGTACGGGTATGAATTTTCACCAACGTGGGTAGGGACCCggaatagataataacgctaaag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR042344 all species →	Family	Zinc finger CCHC domain-containing protein 14	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16195 all species →	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold110.g5.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.