Gene detail

Detailed information of scaffold1107.g1.t1 in Aurelia aurita

Genomic Location: scaffold1107:51...8305
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1107.g1.t1

taaatctcttttgtgatcgaagctttgatcaaagaggggcaagaccgagagagaagacaaatacaccactgaaaacatgtctggaagagcaaccgccaagcgatcgaaaaagagaaccaagtcagctcgtgctggcatcattttcccggtcggtagagtgtacaggtacatcagaaaatgcacacatcatcagagaatcggggttggagctcctatctacacagcggcggtcatggagtatttgtgtgctgagattttggagttggcgggaaacgctgcaagggataataagaaaacaaggatcacgccacgtcatatcttgcttgccatcgcaaatgatctcgagttgcacaagttgcttcaaggtgtgacaatcccacaaggaggagtggtaccgcatatcaacccagagttgttgaagaagcgaaagggaggaaaattaattgccccaccagaaccaaagcccaaaagtggaaaagttgcaaagaaaggaacgaaatcaacaccagttaaagctgtgaaagctgcaaaagaaccaaaggcgccaaagcaaacaccgaccaagaagaagaagttagcagtagcagctggagatgcaagtccttcaaagaaaggcatttcggtcctgtcagaaaaaacacttttcttgggacagaagctttccgttgtgcaaggagacataagtgattttgaagttgatgctatcgttcatccaaccaatgcagctttctatgttggtggggaagttggagacgccctttcaaaagctggtggtgctgacttcttgaaggcagtcgaaaatttgcataagtcacatggagacttggagacctctggagctttggtttctgatggaacgaatttgaaggcaaagtttgtgattcatgtaaatagccctgtgtggggtaaaggaaatccagttgaagaattggagaagactgtccataatgcattgagtttggcagatgagaaatccttggctactattgcgttgccatccattggcagtggaaaatgcatatctgtaagtctttgagatatctttgttgttagtggctagctttgcaagcacgaaatatctaaagggcgggcgctgaaatagtttttctgtggtggaacttcgacacgttgatccaggagtttccttgcttgttttcatgttcaaaattttacttgtgagtttatcaacaagatggaaagtttcacgaaagtactacattaatttgaatctttaatggtctttttcaaccagcatgctttgcgcgtgtcatctctttgttgtcgccatttttcataggccatgaatatggcggcaacaaaggccaagaaagagatggcacgtgcaaagcatgctggttgaaacagaccctttaaggatgctaaaggaagatagcgatgccgtttaagagttcttaggatgccaggaatcttaagtcgagttaaattgtttaagaaagctcagtaattaaagcaggaaaagaggtgccccctctgcccttaaacctcctttaaacctggttttgtctggggtttatacttagtgtcattcgagaaaacaattattcatttcaaaatttaggcgaatgatcattacatttcggagatgactcgctgcaagttctgttcagctcagttcgtttggaagggctgcttcacgcatatgacaatcaggtgctactgtgacgaagcaatatgtatctctctgcaaacaaataggggatttttcgtatgtgtcatagttttgaagaaggaaagcttcgctggctggaagtattaactttgaaacgaaattgtgtcttcgtcgtctttcaagttaattatcttgagcattagatctaaagatggccgtagggttatggaactgtttgtggaaaatattgctttgaacaatgcccaaattgtgactaatatacgtttccatcatgaacaaaagcaacagcaagcgccatgcctgaaatttcctcgcctatttcattaaaaaagaacagctaaagctctgttttcttttgtgactgagttgaatttgttcctcattaatctttgattgaacactgttacagactttgcagttattaatgcggctaagtatggctcaagcagtacaaagagtagacttgccccaagtctatttcatgaagtccttccgaccgatcccttttccatagttcccgtatccgccattccgttagcggatccgggaactatgggaaagggatcggttggaaggacttcatgaatagacttggggcaagtctatacaaagagctcctgtatctcatttaaataaaaaattcggataaacttttattaaaatgatcatcctacaaagatatgtttctgtccaccaaaagatcttcgttccataatgtttccgattacaaggctacatttgctttttatgagaaacttaaaaacttgatccagtgctgagagtttcttaaagtttcttgaaagtttattaggaatttcctcaaattcttcatgttttcatcgtgtgccctcatgaacattttacaacctagttcatgtagacgtccattttccatgtacatttctcaagtacctttcgagtaatacaatacaagaaatagtttaaaatatgatatggattcctttactgaaaacactgttttttcccaagtactggcgtttcttaattctctattgatctgagggttgagtttctcataaagagtttcgtataagaagtactacgtgtatcagttaaaaccgttgccgtttgtagcattgattgagccgtactcgtacgtcagcactgtaaacctatcgctctaaattatgctgttgacacagtatgatatacccaactataaggcttttatgtagtctaaatttagctatggtgtacgattttaaccttggatatatatggtgttttatttaattcggagctcttacttgaacagaaacgatttcatttgatgcgagtggcaaacgatggcaaaattctgctagtctgcccggcgagtctgagtacaaattttatataaatccaaacgatactg

Transcript

scaffold1107.g1.t1

TAAATCTCTTTTGTGATCGAAGCTTTGATCAAAGAGGGGCAAGACCGAGAGAGAAGACAAATACACCACTGAAAACATGTCTGGAAGAGCAACCGCCAAGCGATCGAAAAAGAGAACCAAGTCAGCTCGTGCTGGCATCATTTTCCCGGTCGGTAGAGTGTACAGGTACATCAGAAAATGCACACATCATCAGAGAATCGGGGTTGGAGCTCCTATCTACACAGCGGCGGTCATGGAGTATTTGTGTGCTGAGATTTTGGAGTTGGCGGGAAACGCTGCAAGGGATAATAAGAAAACAAGGATCACGCCACGTCATATCTTGCTTGCCATCGCAAATGATCTCGAGTTGCACAAGTTGCTTCAAGGTGTGACAATCCCACAAGGAGGAGTGGTACCGCATATCAACCCAGAGTTGTTGAAGAAGCGAAAGGGAGGAAAATTAATTGCCCCACCAGAACCAAAGCCCAAAAGTGGAAAAGTTGCAAAGAAAGGAACGAAATCAACACCAGTTAAAGCTGTGAAAGCTGCAAAAGAACCAAAGGCGCCAAAGCAAACACCGACCAAGAAGAAGAAGTTAGCAGTAGCAGCTGGAGATGCAAGTCCTTCAAAGAAAGGCATTTCGGTCCTGTCAGAAAAAACACTTTTCTTGGGACAGAAGCTTTCCGTTGTGCAAGGAGACATAAGTGATTTTGAAGTTGATGCTATCGTTCATCCAACCAATGCAGCTTTCTATGTTGGTGGGGAAGTTGGAGACGCCCTTTCAAAAGCTGGTGGTGCTGACTTCTTGAAGGCAGTCGAAAATTTGCATAAGTCACATGGAGACTTGGAGACCTCTGGAGCTTTGGTTTCTGATGGAACGAATTTGAAGGCAAAGTTTGTGATTCATGTAAATAGCCCTGTGTGGGGTAAAGGAAATCCAGTTGAAGAATTGGAGAAGACTGTCCATAATGCATTGAGTTTGGCAGATGAGAAATCCTTGGCTACTATTGCGTTGCCATCCATTGGCAGTGGAAAATGCATATCTGTAAGTCTTTGAGATATCTTTGTTGTTAGTGGCTAGCTTTGCAAGCACGAAATATCTAAAGGGCGGGCGCTGAAATAGTTTTTCTGTGGTGGAACTTCGACACGTTGATCCAGGAGTTTCCTTGCTTGTTTTCATGTTCAAAATTTTACTTGTGAGTTTATCAACAAGATGGAAAGTTTCACGAAAGTACTACATTAATTTGAATCTTTaatggtctttttcaaccagcatgctttgcgcgtgtcatctctttgttgtcgccatttttcataggccatgaatatggcggcaacaaaggccaagaaagagatggcacgtgcaaagcatgctggttgaaacagaccctttaaGGATGCTAAAGGAAGATAGCGATGCCGTTTAAGAGTTCTTAGGATGCCAGGAATCTTAAGTCGAGTTAAATTGTTTAAGAAAGCTCAGTAATTAAAGCAGGAAAAGAGGTGCCCCCTCTGCCCTTAAACCTCCTTTAAACCTGGTTTTGTCTGGGGTTTATACTTAGTGTCATTCGAGAAAACAATTATTCATTTCAAAATTTAGGCGAATGATCATTACATTTCGGAGATGACTCGCTGCAAGTTCTGTTCAGCTCAGTTCGTTTGGAAGGGCTGCTTCACGCATATGACAATCAGGTGCTACTGTGACGAAGCAATATGTATCTCTCTGCAAACAAATAGGGGATTTTTCGTATGTGTCATAGTTTTGAAGAAGGAAAGCTTCGCTGGCTGGAAGTATTAACTTTGAAACGAAATTGTGTCTTCGTCGTCTTTCAAGTTAATTATCTTGAGCATTAGATCTAAAGATGGCCGTAGGGTTATGGAACTGTTTGTGGAAAATATTGCTTTGAACAATGCCCAAATTGTGACTAATATACGTTTCCATCATGAACAAAAGCAACAGCAAGCGCCATGCCTGAAATTTCCTCGCCTATTTCATTAAAAAAGAACAGCTAAAGCTCTGTTTTCTTTTGTGACTGAGTTGAATTTGTTCCTCATTAATCTTTGATTGAACACTGTTACAGACTTTGCAGTTATTAATGCGGCTAAGTATGGCTCAAGCAGTACAAAGAGtagacttgccccaagtctatttcatgaagtccttccgaccgatcccttttccatagttcccgtatccgccattccgttagcggatccgggaactatgggaaagggatcggttggaaggacttcatgaatagacttggggcaagtctaTACAAAGAGCTCCTGTATCTCATTTAAATAAAAAATTCGGATAAACTTTTATTAAAATGATCATCCTACAAAGATATGTTTCTGTCCACCAAAAGATcttcgttccataatgtttccgattacaaggctacatttgctttttatgagaaacttaaaaacttgatccagtgctgagagtttcttaaagtttcttgaaagtttattaggaatttcctcaaattcttcatgttttcatcgtgtgccctcatgaacattttacaacctagttcatgtagacgtccattttccatgtacatttctcaagtacctttcgagtaatacaatacaagaaatagtttaaaatatgatatggattcctttactgaaaacactgttttttcccaagtactggcgtttcttaattctctattgatctgagggttgagtttctcataaagagtttcgtataagaagtactacgtgtatcagttaaaaccgttgccgtttgtagcattGATTGAGCCGTACTCGTACGTCAGCACTGTAAACCTATCGCTCTAAATTATGCTGTTGACACAGTATGATATACCCAACTATAAGGCTTTTATGTAGTCTAAATTTAGCTATGGTGTACGATTTTAACCTTGGATATATATGGTGTTTTATTTAATTCGGAGCTCTTACTTGAACAGAAACGATTTCATTTGATGCGAGTGGCAAACGATGGCAAAATTCTGCTAGTCTGCCCGGCGAGTCTGAGTACAAATTTTATATAAATCCAAACGATACTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16211 all species →	Histone_H2A_C	C-terminus of histone H2A	Family	Interproscan
PF01661 all species →	Macro	Macro domain	Domain	Interproscan
PF00125 all species →	Histone	Core histone H2A/H2B/H3/H4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002119 all species →	Family	Histone H2A	Interproscan
IPR032454 all species →	Domain	Histone H2A, C-terminal domain	Interproscan
IPR002589 all species →	Domain	Macro domain	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR043472 all species →	Homologous_superfamily	Macro domain-like	Interproscan
IPR007125 all species →	Domain	Histone H2A/H2B/H3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23430 all species →	HISTONE H2A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000786 all species →	Cellular Component	nucleosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0030527 all species →	Molecular Function	structural constituent of chromatin	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0006342 all species →	Biological Process	heterochromatin formation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11251	H2A; histone H2A	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.