Gene detail

Detailed information of scaffold1122.g7.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1122:74242...77564
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1122.g7.t1

aggtgctcactttggtgctgtcatcaaagtttaaaatgacctcgcgcagtctgaagaagccagcaaatgttcaaattgaataaggaactgttcaagctatttgcagcaaagcattgttcaagcagattattttaggaaaagtatcggaaaacggaagatatcgaatatgtatcaaaattcaacgaagagcctagccaacctacgtaaacagcagcaatttgaatatatcacgagtggacgattgtataaactacgctcaatactggaagacgaagaatgtgacgtggatataaactgctttgacgagaacggcctaacaccattgatgcttgcgtgctcatttgatgaagacagggccaagacacgtgatcaaatcattcgaatattgctcaaaaagggagctgaccctaatatttccgatcacaaggggatgacggttttagcgacagcttgcaaagaggagcatatagagattgtgaagcttcttttaaagacagctgtagttgatattgacttcaatgcacgtgatcaccatggtgatatgccactaatgcatgctgttagaactggaaacgttagcctcgttcgcatgttagtagatattatgaagaggctgacgattgatgttgattgtcgaaataatgatgatgtcactccttatctggaagcaaagatgcgcgggctagatgctgttgcggaggtgctaagggtcgatggcaacgcaagtgactcgataatgatatgcccactacttttcgaggactatactggggatgcttgcggccagaatctgaatgcaaaggtgcatcgtgtgccccaaacagttctgaactatcctaagcaaaaagcaaatactggaaacagaaataataacggcagagcgatttcaacgggtcaagctccggtccattcttttgatgcgcatctacgtccaaacagaggaaacgacaaatgccgcagctctggaggtcgaaagggtccaactcgtcgaaaatccagcgaatcaaactttgcttttgaagttacgaaaaggcgagacagaaaatacagcaaaacaaggagcgtaacttcagatttgcgactttccgatgtctcgaaaactgatacagaagatggaagtaattttcgtaagaacaagcaaaaaggctcagcaataaaagaaactatccataaaaccaatctaacagtgacccaagagaagcatcaacaaactgtcaaaagtgacgatattgatttggaaagaagacttcataacgaagctcggattgtaccacaccttaattttgtaggaaagtcacaatcacaacctgtcatatcaatcgccaaccaaacgcaggcgacggagagagaagatctagtggacgattttcattcattgcaagaggctgatttgacgaataaaagcaaagctttcgtgaaacaacaatcacagaaaaaaagtcccaattggaagcgaacattcaatgtaaatgactctcgagaggagatcacgattgattcagctgatcaatcgtgtgaggaatcacaagaaatcgaactaaagcgtgatctcagtgtgcctacttcactacgtagaaatactctgattaggaatatggcaccggggatgctgttgcgaagaccctcatccaatctctcagtagtcttcgcggacgctgccaaatcaccctcgtctcggccaggttctgcctacaatccacgagaatcacacaacttccagttcatacagagaccatcttcgacaaactcatcaacaaagcctagaatttcgtttgaagaagtattcgaactctgccctgagatgagagtttcgaacaagcgggagtggtattcggatctcagatggatgctcgcattacgagcgcaccaagattgtcccacacaccttccaccgcagccagagaggactgcacaggaggaagctctttcagagggaaagcacggaagcgagacaagtagggctagccgcaaaagctcgttacatgaagcaagaaggcctgttctaaggaaaagaaacacggtagtaactcaagcgtcagttaagcttgtaaaagacataagatgatattaatcaagttgagtgattcaacgagactgcagatcaaaaactgaattttggccaatgaagcactgtctacattagaaccactataaatgtatgggagctgtttcaggctgttacaaaagaatacaggttttttgcaggccttactgtacattgtagaagtccttttgatcgatccatttttctatggttcacggatccacaatttcaattccatcattctgtataagcattattggaattgcggatcggatcctggaactatagaagagggattggtgagcagggcttcaggtaatagactcagggcaaatctttgtatatgacagccagaacgacgtagaccttatctgttggttaaaattttttctatgaaggggagccaattggggaggggggggcgggggttgttaggagctcaccttgaccgcttaggcaagactgagaagtctggatatgacgagagagtgcgggtgcacgatgggtttcagttcagaaatgtgaaatatgcttcatacaccccttttatgagaacgtcaaatttttatttcatttccatttcattctatctattttatccatggtagcctgaggaatattattctcattacgtgcagaattgacgattcctttccagagaaagagaaagaggttcctctctgagaagaaatcagtcatttctgctcgcaagccctcagttacaataactgatttataaaacttatgattcacaatagagacgatagaaactaaacgtatatacataattacgctaaattacagatagtgatagaataaacaaaagaagaacaacaatttataggtattcatttttgaagctctttttgaatgctgtcagcgtagatgaattcctagacttgcccaagtgcatttctccagtctctcttcggtacttcctggatccaccgttccagtattccgtcaattacggaatgctggaatggcggatccggggaagggatcgatcagacggacttgtaaagcctggtttccattaaatcgcaaagtgtcgcaagtgtcgcatgtgtcgcagaattttggttctgcaacacattgcgacgaatggaaactgctttactaaaatgctgcgacactctacgatcggtgtcgcagagatagaaacttttctatctctgcgacaatttgcgacactctgcgacactctgcgatcaatggaaacacctgtcctaaagttctgcgatcaattgcgatcccagaacaaaagaatcacatggtg

Transcript

scaffold1122.g7.t1

AGGTGCTCACTTTGGTGCTGTCATCAAAGTTTAAAATGACCTCGCGCAGTCTGAAGAAGCCAGCAAATGTTCAAATTGAATAAGGAACTGTTCAAGCTATTTGCAGCAAAGCATTGTTCAAGCAGATTATTTTAGGAAAAGTATCGGAAAACGGAAGATATCGAATATGTATCAAAATTCAACGAAGAGCCTAGCCAACCTACGTAAACAGCAGCAATTTGAATATATCACGAGTGGACGATTGTATAAACTACGCTCAATACTGGAAGACGAAGAATGTGACGTGGATATAAACTGCTTTGACGAGAACGGCCTAACACCATTGATGCTTGCGTGCTCATTTGATGAAGACAGGGCCAAGACACGTGATCAAATCATTCGAATATTGCTCAAAAAGGGAGCTGACCCTAATATTTCCGATCACAAGGGGATGACGGTTTTAGCGACAGCTTGCAAAGAGGAGCATATAGAGATTGTGAAGCTTCTTTTAAAGACAGCTGTAGTTGATATTGACTTCAATGCACGTGATCACCATGGTGATATGCCACTAATGCATGCTGTTAGAACTGGAAACGTTAGCCTCGTTCGCATGTTAGTAGATATTATGAAGAGGCTGACGATTGATGTTGATTGTCGAAATAATGATGATGTCACTCCTTATCTGGAAGCAAAGATGCGCGGGCTAGATGCTGTTGCGGAGGTGCTAAGGGTCGATGGCAACGCAAGTGACTCGATAATGATATGCCCACTACTTTTCGAGGACTATACTGGGGATGCTTGCGGCCAGAATCTGAATGCAAAGGTGCATCGTGTGCCCCAAACAGTTCTGAACTATCCTAAGCAAAAAGCAAATACTGGAAACAGAAATAATAACGGCAGAGCGATTTCAACGGGTCAAGCTCCGGTCCATTCTTTTGATGCGCATCTACGTCCAAACAGAGGAAACGACAAATGCCGCAGCTCTGGAGGTCGAAAGGGTCCAACTCGTCGAAAATCCAGCGAATCAAACTTTGCTTTTGAAGTTACGAAAAGGCGAGACAGAAAATACAGCAAAACAAGGAGCGTAACTTCAGATTTGCGACTTTCCGATGTCTCGAAAACTGATACAGAAGATGGAAGTAATTTTCGTAAGAACAAGCAAAAAGGCTCAGCAATAAAAGAAACTATCCATAAAACCAATCTAACAGTGACCCAAGAGAAGCATCAACAAACTGTCAAAAGTGACGATATTGATTTGGAAAGAAGACTTCATAACGAAGCTCGGATTGTACCACACCTTAATTTTGTAGGAAAGTCACAATCACAACCTGTCATATCAATCGCCAACCAAACGCAGGCGACGGAGAGAGAAGATCTAGTGGACGATTTTCATTCATTGCAAGAGGCTGATTTGACGAATAAAAGCAAAGCTTTCGTGAAACAACAATCACAGAAAAAAAGTCCCAATTGGAAGCGAACATTCAATGTAAATGACTCTCGAGAGGAGATCACGATTGATTCAGCTGATCAATCGTGTGAGGAATCACAAGAAATCGAACTAAAGCGTGATCTCAGTGTGCCTACTTCACTACGTAGAAATACTCTGATTAGGAATATGGCACCGGGGATGCTGTTGCGAAGACCCTCATCCAATCTCTCAGTAGTCTTCGCGGACGCTGCCAAATCACCCTCGTCTCGGCCAGGTTCTGCCTACAATCCACGAGAATCACACAACTTCCAGTTCATACAGAGACCATCTTCGACAAACTCATCAACAAAGCCTAGAATTTCGTTTGAAGAAGTATTCGAACTCTGCCCTGAGATGAGAGTTTCGAACAAGCGGGAGTGGTATTCGGATCTCAGATGGATGCTCGCATTACGAGCGCACCAAGATTGTCCCACACACCTTCCACCGCAGCCAGAGAGGACTGCACAGGAGGAAGCTCTTTCAGAGGGAAAGCACGGAAGCGAGACAAGTAGGGCTAGCCGCAAAAGCTCGTTACATGAAGCAAGAAGGCCTGTTCTAAGGAAAAGAAACACGGTAGTAACTCAAGCGTCAGTTAAGCTTGTAAAAGACATAAGATGATATTAATCAAGTTGAGTGATTCAACGAGACTGCAGATCAAAAACTGAATTTTGGCCAATGAAGCACTGTCTACATTAGAACCACTATAAATGTATGGGAGCTGTTTCAGGCTGTTACAAAAGAATACAGGTTTTTTGCAGGCCTTACTGTACATTGTAGAAGTCCTTTTGATCGATCCATTTTTCTATGGTTCACGGATCCACAATTTCAATTCCATCATTCTGTATAAGCATTATTGGAATTGCGGATCGGATCCTGGAACTATAGAAGAGGGATTGGTGAGCAGGGCTTCAGGTAATAGACTCAGGGCAAATCTTTGTATATGACAGCCAGAACGACGTAGACCTTATCTGTTGGTTAAAATTTTTTCTATGAAGGGGAGCCAATTGGGGAGGGGGGGGCGGGGGTTGTTAGGAGCTCACCTTGACCGCTTAGGCAAGACTGAGAAGTCTGGATATGACGAGAGAGTGCGGGTGCACGATGGGTTTCAGTTCAGAAATGTGAAATATGCTTCATACACCCCTTTTATGAGAACGTCAAATttttatttcatttccatttcattctatctattttatCCATGGTAGCCTGAGGAATATTATTCTCATTACGTGCAGAATTGACGATTCCTTTCCAGAGAAAGAGAAAGAGGTTCCTCTCTGAGAAGAAATCAGTCATTTCTGCTCGCAAGCCCTCAGTTACAATAACTGATTTATAAAACTTATGATTCACAATAGAGACGATAGAAACTAAACGTATATACATAATTACGCTAAATTACAGATAGTGATAGAATAAACAAAAGAAGAACAACAATTTATAGGTATTCATTTTTGAAGCTCTTTTTGAATGCTGTCAGCGTAGATGAATTCCTAGACTTGCCCAAGTGCATTTCTCCAGTCTCTCTTCGGTACTTCCTGGATCCACCGTTCCAGTATTCCGTCAATTACGGAATGCTGGAATGGCGGATCCGGGGAAGGGATCGATCAGACGGACTTGTAAAGCCTGGTTTCCATTAAATCGCAAAGTGTCGCAAGTGTCGCATGTGTCGCAGAATTTTGGTTCTGCAACACATTGCGACGAATGGAAACTGCTTTACTAAAATGCTGCGACACTCTACGATCGGTGTCGCAGAGATAGAAACTTTTCTATCTCTGCGACAATTTGCGACACTCTGCGACACTCTGCGATCAATGGAAACACCTGTCCTAAAGTTCTGCGATCAATTGCGATCCCAGAACAAAAGAATCACATGGTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR052771 all species →	Family	Neurotrophin-activated signaling adaptor	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24116 all species →	KINASE D-INTERACTING SUBSTRATE OF 220 KDA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019887 all species →	Molecular Function	protein kinase regulator activity	Interproscan
GO:0030165 all species →	Molecular Function	PDZ domain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold1122.g7.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.