Gene detail

Detailed information of scaffold1122.g9.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1122:91513...100434
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1122.g9.t1

catttctttgttgatgtcgctgaggcgtagcaaaccagagcaaccaggaaaacaagatggcgactgcttcccttctcctttcttatcaaatatcacaaggaggctacccgggagggaggcagactgtgacgtcatgtggatgtcagtcctgtttctttttatattttcaacacaaaagctgatcataaactttctgtattcatgaatatcaaatttttatactgggtaccaggtaccagaaacgttattatacgtcctatttgatggacattttttccaatattgttttcagacagaaccttgccctctgcggaggacgatttgctgcgttgcatcagacaagtaaaacaaccagctacgtcacaagatgatcacaaaacaagatggcgtcgtatgatggagctgaggtgaaaacgccttcaagttttaccagtgaaaatgcaagtaaagaagacgagggtgatcaaaacagcaacttcgaatgtaacatatgccttgatgtagcaagggatgcagttgttagcctttgtggccatctattttgctggccatgcttacacaagtggctagagacacgaccaaacaggcccatgtgtcctgtttgcaaggctggtataagtaaagacaaagttattccattgtatggaaaagacaacccagaacgaaaagatcccagagaaaaattgccaccaaggccccaagcacaaagacctgaaccagaaaacaattttaatccatttcaaggctttggatttggaaatcctggtggagttcaattttcatttggcataggagccttcccttttgcattcttcacaacggcatttggaaacaatgaagcgccaagaaatcccgaatcgccacaagcacaagaagaacaattcttatctaggctgtttctttggattgcactgttgtttctcttttggctgttatttgcgtagaggtagagagtcgtccaaaatgtgtacagtagaatcaagtcaaggtccactttcagatgcatccaccgagttggtaaaaatagttagaaaaatatagtcttaaagaaagatagcgcaattgagttcattttcataaggtccactttcagatgcctctaccgagttggtaaaaaaagttagaaaaatatagtcttaaagaaagatagccaaattgggttcattttcatcgctgtgaagcttagcctgcgggcatttaaaaatttgattcagaagtttactgtctggaccgattctgagataaaactcttctatatataagatcacgtgtaaatcgagaacaacaggaccaactttaaccaactaaattttataatctatgttgacacgttagttactcaagaagaatcactttgaaagaatctgaccgacgaacagctagcaaactactggcttacaacagtttaaaccatgtttaaacttgttttgattcactcagcatatctgagtttttcttcgaataggcattgtgtgtactattctcccaaaaagatctaccgattttaccagctacggaaaactacaaccattgaaacaaccactgaatcttttctcatgtgaaagatcaaggaatattcttacctcagccattgaagaggccctaagttagcctttgtaaactttgaattttttataccaacgagccgtttcacttcactgacagatcaaatcggtaaactttattgggacgccaggtgaaatgaaatttcgtcagttactattctccttcattaacacggtcttcttttcaaagaacttttctataatttgaagagaccagactatagacagcaaaaactattttactaaagctggtgctagcaaagtatctaccgagatctcttttcagggacgtaggaagcatctcaaacttggaggggcacgacacttcaagggcacttattttattaagctaaagaggcacttcctgaaaataaaaagggcacttctttgtttattccaaaatcttgggggggcacgtgtgcccagtgcccccccggttcctacgtctctgtctcttttcgatatgaacatttgatttaacagtaattcgacttttggattatcataggatacacaaacacatgaaattttgtggttacatatttggcacagttatcgattatcgcaaaacaggtgacatttgtaccatagtaaatgcagttttagcaaaaattagaatcggaggtagtcgtaatatggtcataagttgaaaacaaatgaaaaaaagtgagaaatattttcgcgtacagtactgtaggtacattatcaactaagaaacgactgtgttttcaatttcagcccattgtttaaaaatgataaacaattgtctttccattgtcttttcaaaaattcagcatctgattttcttgaaggtgtgtttcttagttgtttgtatgtactgtaccttctgtctgtatgactggtaatagcagtattccagtggcttaatctgcagtagtatttagtttcagtatataatatatttaatcctacggctgtattctaaatcttgttattcatattagttggatgtatttgcttttagctggatgtatcattaagcatataaggtattagcatggtactgtttaagtgacaatttaagtgattcataatatgcaacaatatttgattcagatgtgtagaaatgggtttctaccgcgttatctatgtcgaaaacagatagtatacacaagtctctttggtgatagttgttactttgcgactattagaatcggatttgttaatttggatagcactagaatgatgaatggaagtctaagaaaaattttactttccttgtttatcttttttgaagaaacgatgaataaaagttcaataagaaatatgggaggtatta

Transcript

scaffold1122.g9.t1

CATTTCTTTGTTGATGTCGCTGAGGCGTAGCAAACCAGAGCAACCAGGAAAACAAGATGGCGACTGCTTCCCTTCTCCTTTCTTATCAAATATCACAAGGAGGCTACCCGGGAGGGAGGCAGACTGTGACGTCATGTGGATGTCAGTCCTGTTTCTTTTTATATTTTCAACACAAAAGCTGATCATAAACTTTCTGTATTCATGAATATCAAATTTTTATACTGGGTACCAGGTACCAGAAACGTTATTATACGTCCTATTTGATGGACATTTTTTCCAATATTGTTTTCAGACAGAACCTTGCCCTCTGCGGAGGACGATTTGCTGCGTTGCATCAGACAAGTAAAACAACCAGCTACGTCACAAGATGATCACAAAACAAGATGGCGTCGTATGATGGAGCTGAGGTGAAAACGCCTTCAAGTTTTACCAGTGAAAATGCAAGTAAAGAAGACGAGGGTGATCAAAACAGCAACTTCGAATGTAACATATGCCTTGATGTAGCAAGGGATGCAGTTGTTAGCCTTTGTGGCCATCTATTTTGCTGGCCATGCTTACACAAGTGGCTAGAGACACGACCAAACAGGCCCATGTGTCCTGTTTGCAAGGCTGGTATAAGTAAAGACAAAGTTATTCCATTGTATGGAAAAGACAACCCAGAACGAAAAGATCCCAGAGAAAAATTGCCACCAAGGCCCCAAGCACAAAGACCTGAACCAGAAAACAATTTTAATCCATTTCAAGGCTTTGGATTTGGAAATCCTGGTGGAGTTCAATTTTCATTTGGCATAGGAGCCTTCCCTTTTGCATTCTTCACAACGGCATTTGGAAACAATGAAGCGCCAAGAAATCCCGAATCGCCACAAGCACAAGAAGAACAATTCTTATCTAGGCTGTTTCTTTGGATTGCACTGTTGTTTCTCTTTTGGCTGTTATTTGCGTAGAGGTAGAGAGTCGTCCAAAATGTGTACAGTAGAATCAAGTCAAGGTCCACTTTCAGATGCATCCACCGAGTTGGTAAAAATAGTTAGAAAAATATAGTCTTAAAGAAAGATAGCGCAATTGAGTTCATTTTCATAAGGTCCACTTTCAGATGCCTCTACCGAGTTGGTAAAAAAAGTTAGAAAAATATAGTCTTAAAGAAAGATAGCCAAATTGGGTTCATTTTCATCGCTGTGAAGCTTAGCCTGCGGGCATTTAAAAATTTGATTCAGAAGTTTACTGTCTGGACCGATTCTGAGATAAAACTCTTCTATATATAAGATCACGTGTAAATCGAGAACAACAGGACCAACTTTAACCAACTAAATTTTATAATCTATGTTGACACGTTAGTTACTCAAGAAGAATCACTTTGAAAGAATCTGACCGACGAACAGCTAGCAAACTACTGGCTTACAACAGTTTAAACCATGTTTAAACTTGTTTTGATTCACTCAGCATATCTGAGTTTTTCTTCGAATAGGCATTGTGTGTACTATTCTCCCAAAAAGATCTACCGATTTTACCAGCTACGGAAAACTACAACCATTGAAACAACCACTGAATCTTTTCTCATGTGAAAGATCAAGGAATATTCTTACCTCAGCCATTGAAGAGGCCCTAAGTTAGCCTTTGTAAACTTTGAATTTTTTATACCAACGAGCCGTTTCACTTCACTGACAGATCAAATCGGTAAACTTTATTGGGACGCCAGGTGAAATGAAATTTCGTCAGTTACTATTCTCCTTCATTAACACGGTCTTCTTTTCAAAGAACTTTTCTATAATTTGAAGAGACCAGACTATAGACAGCAAAAACTATTTTACTAAAGCTGGTGCTAGCAAAGTATCTACCGAGATCTCTTTTcagggacgtaggaagcatctcaaacttggaggggcacgacacttcaagggcacttattttattaagctaaagaggcacttcctgaaaataaaaagggcacttctttgtttattccaaaatcttgggggggcacgtgtgcccagtgcccccccggttcctacgtctctgTCTCTTTTCGATATGAACATTTGATTTAACAGTAATTCGACTTTTGGATTATCATAGGATACACAAACACATGAAATTTTGTGGTTACATATTTGGCACAGTTATCGATTATCGCAAAACAGGTGACATTTGTACCATAGTAAATGCAGTTTTAGCAAAAATTAGAATCGGAGGTAGTCGTAATATGGTCATAAGTTGAAAACAAATGAAAAAAAGTGAGAAATATTTTCGCGTACAGTACTGTAGGTACATTATCAACTAAGAAACGACTGTGTTTTCAATTTCAGCCCATTGTTTAAAAATGATAAACAATTGTCTTTCCATTGTCTTTTCAAAAATTCAGCATCTGATTTTCTTGAAGGTGTGTTTCTTAGTTGTTTGTATGTACTGTACCTTCTGTCTGTATGACTGGTAATAGCAGTATTCCAGTGGCTTAATCTGCAGTAGTATTTAGTTTCAGTATATAATATATTTAATCCTACGGCTGTATTCTAAATCTTGTTATTCATATTAGTTGGATGTATTTGCTTTTAGCTGGATGTATCATTAAGCATATAAGGTATTAGCATGGTACTGTTTAAGTGACAATTTAAGTGATTCATAATATGCAACAATATTTGATTCAGATGTGTAGAAATGGGTTTCTACCGCGTTATCTATGTCGAAAACAGATAGTATACACAAGTCTCTTTGGTGATAGTTGTTACTTTGCGACTATTAGAATCGGATTTGTTAATTTGGATAGCACTAGAATGATGAATGGAAGTCTAAGAAAAATTTTACTTTCCTTGTTTATCTTTTTTGAAGAAACGATGAATAAAAGTTCAATAAGAAATATGGGAGGTATTA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR045103 all species →	Family	E3 ubiquitin-protein ligase RNF5/RNF185-like	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12313 all species →	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0044390 all species →	Molecular Function	ubiquitin-like protein conjugating enzyme binding	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0071712 all species →	Biological Process	obsolete ER-associated misfolded protein catabolic process	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10666	RNF5_185; E3 ubiquitin-protein ligase RNF5/185	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.